Browse Element(s) Details


Os.50562.1.S1_at

Description gb:AK121853.1
DB_XREF= gi:37991476
TID=Os.50562.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50562 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033101E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033101P07, full insert sequence.
FL= gb:AK121853.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1238010/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g12350NANA12+6792728..6793183retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g12360Os.11813.1.S1_at11/1112+6798290..6805850transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g12370Os.8870.1.S1_s_at9/1112+6810024..6814077outer envelope protein, putative, expressed
LOC_Os12g12380Os.50562.3.S1_x_at11/1112+6814189..6819309transposon protein, putative, unclassified, expressed
LOC_Os12g12380Os.50562.1.S1_at10/1112+6814189..6819309transposon protein, putative, unclassified, expressed
LOC_Os12g12380Os.50562.2.S1_at9/1112+6814189..6819309transposon protein, putative, unclassified, expressed
LOC_Os12g12390Os.27497.1.S1_at10/1112+6820124..6821361transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g12400Os.47999.3.S1_x_at1/1112+6828160..6830764Zinc knuckle family protein
LOC_Os12g12410NANA12+6835475..6840040retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g12420NANA12+6840295..6841182retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g12429NANA12+6843871..6845114NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
Os.50562.1.S1_at--441--10351Chr12:6816400..6816424 (25 bp)
TTTATACCATGCGTCTTCACTCTTA
LOC_Os12g12380
Os.50562.1.S1_at--516--4651Chr12:6816390..6816414 (25 bp)
GCGTCTTCACTCTTAATAATGGTTT
LOC_Os12g12380
Os.50562.1.S1_at--646--2971Chr12:6816373..6816397 (25 bp)
AATGGTTTTTAGTTGTGCTTTAGAT
LOC_Os12g12380
Os.50562.1.S1_at--773--10071NONE
TATGGTCCTGATCATACCCAAAAAA
NONE
Os.50562.1.S1_at--592--6111Chr12:6816216..6816240 (25 bp)
GAGTGCAGAGTCACAGATCTCTTAG
LOC_Os12g12380
Os.50562.1.S1_at--958--7091Chr12:6816207..6816231 (25 bp)
GTCACAGATCTCTTAGACTCAAATT
LOC_Os12g12380
Os.50562.1.S1_at--448--7471Chr12:6816157..6816181 (25 bp)
GTGTGATGTGCATTGGTACCATATC
LOC_Os12g12380
Os.50562.1.S1_at--446--31Chr12:6816146..6816170 (25 bp)
ATTGGTACCATATCAAATGCTTTCT
LOC_Os12g12380
Os.50562.1.S1_at--1119--10151Chr12:6816136..6816160 (25 bp)
TATCAAATGCTTTCTTATCAGAGTC
LOC_Os12g12380
Os.50562.1.S1_at--773--9551Chr12:6816124..6816148 (25 bp)
TCTTATCAGAGTCAAGCCATGCAAA
LOC_Os12g12380
Os.50562.1.S1_at--527--10631Chr12:6816083..6816107 (25 bp)
TTGCCTTTACAGGAACCTAAAATCT
LOC_Os12g12380
Target Sequence
TTTATACCATGCGTCTTCACTCTTAATAATGGTTTTTAGTTGTGCTTTAGATTTGAATAAATAATTGGTGAATTTTTACA
ATTGAGAGGACATATGCAAGCAATTATTTGTATTTAGTTACTGGAATCAGTAGAATTTGATTTAGTTATGGTCCTGATCA
TACCCAAAAAAAGCACGCTAAAAAGAGTGCAGAGTCACAGATCTCTTAGACTCAAATTGAGATGACAACCATCATAAAAC
ATTGTGTGATGTGCATTGGTACCATATCAAATGCTTTCTTATCAGAGTCAAGCCATGCAAAAAATGATGCATTTTCTTTG
CCTTTACAGGAACCTAAAATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50562.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis