Browse Element(s) Details


Os.11813.1.S1_at

Description gb:AK059945.1
DB_XREF= gi:32969963
TID=Os.11813.1
CNT=67
FEA=FLmRNA
TIER=FL+Stack
STK=15
UG=Os.11813 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-011-G03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-210-G09, full insert sequence.
FL= gb:AK059945.1 gb:AK060450.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1236011/11transposon protein, putative, Mutator sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g12320OsAffx.7564.1.S1_at11/1112+6775491..6776477hypothetical protein
LOC_Os12g12330OsAffx.31715.1.S1_at11/1112+6777907..6778581hypothetical protein
LOC_Os12g12340NANA12+6780564..6788000retrotransposon protein, putative, unclassified
LOC_Os12g12350NANA12+6792728..6793183retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g12360Os.11813.1.S1_at11/1112+6798290..6805850transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g12370Os.8870.1.S1_s_at9/1112+6810024..6814077outer envelope protein, putative, expressed
LOC_Os12g12380Os.50562.3.S1_x_at11/1112+6814189..6819309transposon protein, putative, unclassified, expressed
LOC_Os12g12380Os.50562.1.S1_at10/1112+6814189..6819309transposon protein, putative, unclassified, expressed
LOC_Os12g12380Os.50562.2.S1_at9/1112+6814189..6819309transposon protein, putative, unclassified, expressed
LOC_Os12g12390Os.27497.1.S1_at10/1112+6820124..6821361transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g12400Os.47999.3.S1_x_at1/1112+6828160..6830764Zinc knuckle family protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11813.1.S1_at--656--1431Chr12:6799042..6799066 (25 bp)
AGAACTACCACAACGGTCAGCACCA
LOC_Os12g12360
Os.11813.1.S1_at--8--7551Chr12:6798973..6798997 (25 bp)
GTGGCGCTCATCATGTTGGGACTCC
LOC_Os12g12360
Os.11813.1.S1_at--1054--5051Chr12:6798912..6798936 (25 bp)
GCAGCTGCCAATTGGAGCCACCAAG
LOC_Os12g12360
Os.11813.1.S1_at--716--8671Chr12:6798805..6798829 (25 bp)
TGTGTGCAGCCGTCGAGCCTTGAAC
LOC_Os12g12360
Os.11813.1.S1_at--1115--8971Chr12:6798785..6798809 (25 bp)
TGAACCCTATTCATCGTCACGATAG
LOC_Os12g12360
Os.11813.1.S1_at--904--10571Chr12:6798714..6798738 (25 bp)
TTCTCTTTTCGGAACATGGTTTACT
LOC_Os12g12360
Os.11813.1.S1_at--242--10271Chr12:6798685..6798709 (25 bp)
TTTGATGGGTGTGTGCCTAGGCCAA
LOC_Os12g12360
Os.11813.1.S1_at--951--871Chr12:6798667..6798691 (25 bp)
AGGCCAAGTGTTTTGGAACCGTCTG
LOC_Os12g12360
Os.11813.1.S1_at--103--5451Chr12:6798652..6798676 (25 bp)
GAACCGTCTGTTATGGTATTGTCAT
LOC_Os12g12360
Os.11813.1.S1_at--152--5011Chr12:6798576..6798600 (25 bp)
GCATGGTTAAGTTGGCTACCACTAC
LOC_Os12g12360
Os.11813.1.S1_at--159--9971Chr12:6798560..6798584 (25 bp)
TACCACTACTACCATTTTGGACCCA
LOC_Os12g12360
Target Sequence 
AGAACTACCACAACGGTCAGCACCACAATCACCACGCCAACAACCACCACCACCAAGGTGGCAACCGTGGTGGCGCTCAT
CATGTTGGGACTCCGCCCAATCAACAGCAAACCAAGCCTGAGCAGCACCCGCAGCTGCCAATTGGAGCCACCAAGCAGCC
TCCCGGCCCTCGCATGCCAGATGGCACGCGGGGTTTCACCTTGGGCAGAGGGAAGCCGCAACCGTTNCTACCGGTTCTGT
GTGCAGCCGTCGAGCCTTGAACCCTATTCATCGTCACGATAGGGTATGCGGCGGCGAGTGCTGGTGTTGATAGAGATGGT
TGGAGGTCTTCTCTTTTCGGAACATGGTTTACTTGATTTTGATGGGTGTGTGCCTAGGCCAAGTGTTTTGGAACCGTCTG
TTATGGTATTGTCATGTGTTTTGAAGCCAAACATTGTTGTTCTGGTTGGTACAGACTTGGTGAGTTGCATGGTTAAGTTG
GCTACCACTACTACCATTTTGGACCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11813.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis