Browse Element(s) Details


OsAffx.7564.1.S1_at

Description tigr:9640.m01181
TID=OsAffx.7564.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1232011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g12290OsAffx.31713.1.S1_at11/1112+6753995..6755660Exostosin family protein, expressed
LOC_Os12g12300Os.27993.1.S1_at10/1112+6758950..6761920hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os12g12310NANA12+6770883..6771378hypothetical protein
LOC_Os12g12320OsAffx.7564.1.S1_at11/1112+6775491..6776477hypothetical protein
LOC_Os12g12330OsAffx.31715.1.S1_at11/1112+6777907..6778581hypothetical protein
LOC_Os12g12340NANA12+6780564..6788000retrotransposon protein, putative, unclassified
LOC_Os12g12350NANA12+6792728..6793183retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g12360Os.11813.1.S1_at11/1112+6798290..6805850transposon protein, putative, Mutator sub-class, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7564.1.S1_at--1056--8951Chr12:6776042..6776066 (25 bp)
TGAAGAGATCATGTCGGGCCAAAAG
LOC_Os12g12320
OsAffx.7564.1.S1_at--746--5571Chr12:6776101..6776125 (25 bp)
GAAATTCCATTTGACTACTCCTCTA
LOC_Os12g12320
OsAffx.7564.1.S1_at--169--3591Chr12:6776108..6776132 (25 bp)
CATTTGACTACTCCTCTACATCTAC
LOC_Os12g12320
OsAffx.7564.1.S1_at--631--9751Chr12:6776271..6776294 (24 bp)
TAATCCCAATGATCCCACCAAAGAG
LOC_Os12g12320
OsAffx.7564.1.S1_at--74--971Chr12:6776293..6776317 (25 bp)
AGGACGACGTGAACCAACACAAGAA
LOC_Os12g12320
OsAffx.7564.1.S1_at--997--3231Chr12:6776322..6776346 (25 bp)
CAAGCCGCTAATGCCATATTTAGCA
LOC_Os12g12320
OsAffx.7564.1.S1_at--624--4431Chr12:6776334..6776358 (25 bp)
GCCATATTTAGCACCTTGAGCGGTA
LOC_Os12g12320
OsAffx.7564.1.S1_at--68--5091Chr12:6776344..6776368 (25 bp)
GCACCTTGAGCGGTAGTGAGTTCAA
LOC_Os12g12320
OsAffx.7564.1.S1_at--372--1351Chr12:6776396..6776420 (25 bp)
AGAGATATGGTACACACTTCAGAAT
LOC_Os12g12320
OsAffx.7564.1.S1_at--965--7831Chr12:6776404..6776428 (25 bp)
GGTACACACTTCAGAATGTTCATGA
LOC_Os12g12320
OsAffx.7564.1.S1_at--69--9631Chr12:6776423..6776447 (25 bp)
TCATGAAGCCATGGATAGTGTCCGC
LOC_Os12g12320
Target Sequence 
TGAAGAGATCATGTCGGGCCAAAAGGGGGGACCAAAAGGAGGTTTCCAAAAACGGAACCGAAATTCCATTTGACTACTCC
TCTACATCTACATATAATCCCAATGATCCCACCAAAGAGGACGACGTGAACCAACACAAGAACGCTCAAGCCGCTAATGC
CATATTTAGCACCTTGAGCGGTAGTGAGTTCAACCGAGTGGATGGCATAGAGAGTACCAAAGAGATATGGTACACACTTC
AGAATGTTCATGAAGCCATGGATAGTGTCCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7564.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis