Browse Element(s) Details


OsAffx.31713.1.S1_at

Description tigr:9640.m01178
TID=OsAffx.31713.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Exostosin family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1229011/11Exostosin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g12260Os.51035.1.S1_at11/1112+6728591..6733242Diacylglycerol kinase 1, putative, expressed
LOC_Os12g12260OsAffx.31710.1.S1_x_at10/1112+6728591..6733242Diacylglycerol kinase 1, putative, expressed
LOC_Os12g12270Os.20602.2.S1_x_at11/1112+6734459..6736639hAT family dimerisation domain containing protein
LOC_Os12g12280OsAffx.10645.1.S1_at2/1112+6743433..6743750hypothetical protein
LOC_Os12g12290OsAffx.31713.1.S1_at11/1112+6753995..6755660Exostosin family protein, expressed
LOC_Os12g12300Os.27993.1.S1_at10/1112+6758950..6761920hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os12g12310NANA12+6770883..6771378hypothetical protein
LOC_Os12g12320OsAffx.7564.1.S1_at11/1112+6775491..6776477hypothetical protein
LOC_Os12g12330OsAffx.31715.1.S1_at11/1112+6777907..6778581hypothetical protein
LOC_Os12g12340NANA12+6780564..6788000retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31713.1.S1_at--157--7791Chr12:6754524..6754548 (25 bp)
GGTGCGGCATGCTCGACTGCAGCCA
LOC_Os12g12290
OsAffx.31713.1.S1_at--300--9371Chr12:6754512..6754536 (25 bp)
TCGACTGCAGCCACGGCCTCGAGGG
LOC_Os12g12290
OsAffx.31713.1.S1_at--145--6231Chr12:6754345..6754369 (25 bp)
GAGGCCTCCACGTTCAAGAAGCAGT
LOC_Os12g12290
OsAffx.31713.1.S1_at--458--3331Chr12:6754337..6754361 (25 bp)
CACGTTCAAGAAGCAGTACCAATGG
LOC_Os12g12290
OsAffx.31713.1.S1_at--995--1171Chr12:6754323..6754347 (25 bp)
AGTACCAATGGCACGAGCGCGACGC
LOC_Os12g12290
OsAffx.31713.1.S1_at--694--4471Chr12:6754266..6754290 (25 bp)
GCCGGCGATACTCCGTAGTCATCGA
LOC_Os12g12290
OsAffx.31713.1.S1_at--150--3531Chr12:6754247..6754271 (25 bp)
CATCGACCCCGATGATGTCGTCGAA
LOC_Os12g12290
OsAffx.31713.1.S1_at--748--991Chr12:6754147..6754171 (25 bp)
AGGATGATCCCTAGGTTCGTGTACA
LOC_Os12g12290
OsAffx.31713.1.S1_at--281--6711Chr12:6754133..6754157 (25 bp)
GTTCGTGTACAAGGACCCTAGGGTG
LOC_Os12g12290
OsAffx.31713.1.S1_at--31--2231Chr12:6754125..6754149 (25 bp)
ACAAGGACCCTAGGGTGAGATTCGA
LOC_Os12g12290
OsAffx.31713.1.S1_at--967--7631Chr12:6754089..6754113 (25 bp)
GGGACGCCTTCGACATCACCTTCGA
LOC_Os12g12290
Target Sequence 
GGTGCGGCATGCTCGACTGCAGCCACGGCCTCGAGGGCAGCATCACCTGCCGCTCGCCGCGCCGCCTCGTCGCGCTCTTC
GCCTCCGCCCGCTTCTGCCTCCAGCCTCCCGGCGACTCCTTCATGCGCCGCTCCTCCATCGACACCGTCCTCGCCGGCTG
CATCCCGGTGTTCTTCCACGAGGCCTCCACGTTCAAGAAGCAGTACCAATGGCACGAGCGCGACGCCGACGCCGACAACG
ACAACGCCACCGTTGATCGCCGGCGATACTCCGTAGTCATCGACCCCGATGATGTCGTCGAAGGCCGGGTGCGCATCGAG
GAGGTGTTGAGGAGGTTCAGCGACGACGAGGTGGCCGCCATGAGAGAGGAGGTGATCAGGATGATCCCTAGGTTCGTGTA
CAAGGACCCTAGGGTGAGATTCGAGGGCGACATGAGGGACGCCTTCGACATCACCTTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31713.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis