Browse Element(s) Details


Os.27993.1.S1_at

Description gb:AK063569.1
DB_XREF= gi:32973587
TID=Os.27993.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27993 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033146H17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-117-G03, full insert sequence.
FL= gb:AK103802.1 gb:AK063569.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1230010/11hydroxyproline-rich glycoprotein family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g12270Os.20602.2.S1_x_at11/1112+6734459..6736639hAT family dimerisation domain containing protein
LOC_Os12g12280OsAffx.10645.1.S1_at2/1112+6743433..6743750hypothetical protein
LOC_Os12g12290OsAffx.31713.1.S1_at11/1112+6753995..6755660Exostosin family protein, expressed
LOC_Os12g12300Os.27993.1.S1_at10/1112+6758950..6761920hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os12g12310NANA12+6770883..6771378hypothetical protein
LOC_Os12g12320OsAffx.7564.1.S1_at11/1112+6775491..6776477hypothetical protein
LOC_Os12g12330OsAffx.31715.1.S1_at11/1112+6777907..6778581hypothetical protein
LOC_Os12g12340NANA12+6780564..6788000retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27993.1.S1_at--336--5431Chr12:6759492..6759516 (25 bp)
GAACCACATTATCTTTCCTGATTGC
LOC_Os12g12300
Os.27993.1.S1_at--745--9791Chr12:6759457..6759481 (25 bp)
TAACACGTGGTCCTTCGAAGCCCAA
LOC_Os12g12300
Os.27993.1.S1_at--913--5371Chr12:6759395..6759419 (25 bp)
GAAGAAGACATGTCGCCTGATCATT
LOC_Os12g12300
Os.27993.1.S1_at--688--2971Chr12:6759302..6759326 (25 bp)
AATGGTTTCAATTCGTTTGCGCCGA
LOC_Os12g12300
Os.27993.1.S1_at--443--911Chr12:6759252..6759276 (25 bp)
AGGCTCCTGTGGTTGGCTTGATGAC
LOC_Os12g12300
Os.27993.1.S1_at--290--5291Chr12:6759124..6759148 (25 bp)
GAATGTGCAACGCAATCTACTCTGT
LOC_Os12g12300
Os.27993.1.S1_at--928--6651Chr12:6759101..6759125 (25 bp)
GTTGAACTGTCACGTGCTAAGCCAC
LOC_Os12g12300
Os.27993.1.S1_at--333--2511Chr12:6759030..6759054 (25 bp)
AACATTGCGGTTGACCAGTGTCCAG
LOC_Os12g12300
Os.27993.1.S1_at--598--3451Chr12:6759015..6759039 (25 bp)
CAGTGTCCAGTAGCCTGCATTATGT
LOC_Os12g12300
Os.27993.1.S1_at--90--6291Chr12:6758986..6759010 (25 bp)
GATGTTTTTGTTTCCAGAGATGTCC
LOC_Os12g12300
Os.27993.1.S1_at--900--9791Chr12:6758950..6758974 (25 bp)
TAAGCTGGTGCATATCTGTGCTATT
NONE
Target Sequence 
GAACCACATTATCTTTCCTGATTGCAAAAACCTTTTAACACGTGGTCCTTCGAAGCCCAAAGGGCAAGAAGACGCACCCG
CAGTACTAGATATACCTGAAGAAGACATGTCGCCTGATCATTCCTCCGAACCATCCCAGCCGCCTCCACAGCCGGCAGCT
GAAACTGATCAAACTGACCAGGATCTTTCCAATGGTTTCAATTCGTTTGCGCCGAAGGCCTTGTTCCCACTTCCATATCC
AGGCTCCTGTGGTTGGCTTGATGACTGACCATCCAACCTCACTCATCTAGATAAATCCTAACACATATATACGCCAGCAG
ATTGGTGTAATTCCTGCTAGAACACTTTGTTCGGAAATTGGGAAGTTAGAATGTGCAACGCAATCTACTCTGTTGAACTG
TCACGTGCTAAGCCACTTGTGTGTATTGTTATCATTATTATGTTATTATTTTAATGGAAGATAACATTGCGGTTGACCAG
TGTCCAGTAGCCTGCATTATGTTTCTGATGTTTTTGTTTCCAGAGATGTCCAAGTGAAGCAATAAGCTGGTGCATATCTG
TGCTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27993.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis