Browse Element(s) Details


OsAffx.31715.1.S1_at

Description tigr:9640.m01182
TID=OsAffx.31715.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=copia-like retroelement, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1233011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g12290OsAffx.31713.1.S1_at11/1112+6753995..6755660Exostosin family protein, expressed
LOC_Os12g12300Os.27993.1.S1_at10/1112+6758950..6761920hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os12g12310NANA12+6770883..6771378hypothetical protein
LOC_Os12g12320OsAffx.7564.1.S1_at11/1112+6775491..6776477hypothetical protein
LOC_Os12g12330OsAffx.31715.1.S1_at11/1112+6777907..6778581hypothetical protein
LOC_Os12g12340NANA12+6780564..6788000retrotransposon protein, putative, unclassified
LOC_Os12g12350NANA12+6792728..6793183retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g12360Os.11813.1.S1_at11/1112+6798290..6805850transposon protein, putative, Mutator sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31715.1.S1_at--287--7031Chr12:6777939..6777963 (25 bp)
GTACATCTACCAAAGCTCAATCTCA
LOC_Os12g12330
OsAffx.31715.1.S1_at--697--931Chr12:6778340..6778364 (25 bp)
AGGAATTGGCCACTTTCACCATCAA
LOC_Os12g12330
OsAffx.31715.1.S1_at--387--10851Chr12:6778345..6778369 (25 bp)
TTGGCCACTTTCACCATCAAGCCGT
LOC_Os12g12330
OsAffx.31715.1.S1_at--223--3551Chr12:6778373..6778397 (25 bp)
CATCTCCTACACTAAGGCTCTTCAA
LOC_Os12g12330
OsAffx.31715.1.S1_at--4--9711Chr12:6778394..6778418 (25 bp)
TCAACTACTCGAGTGATGACAACGC
LOC_Os12g12330
OsAffx.31715.1.S1_at--119--2011Chr12:6778400..6778424 (25 bp)
ACTCGAGTGATGACAACGCTCCTAT
LOC_Os12g12330
OsAffx.31715.1.S1_at--663--2211Chr12:6778412..6778436 (25 bp)
ACAACGCTCCTATATGTCTCATGGT
LOC_Os12g12330
OsAffx.31715.1.S1_at--1017--1831Chr12:6778415..6778439 (25 bp)
ACGCTCCTATATGTCTCATGGTTGA
LOC_Os12g12330
OsAffx.31715.1.S1_at--502--9491Chr12:6778428..6778452 (25 bp)
TCTCATGGTTGAGCCTAAGGTACCT
LOC_Os12g12330
OsAffx.31715.1.S1_at--707--9971Chr12:6778448..6778472 (25 bp)
TACCTTCTCCACTCAAGTCATTCAG
LOC_Os12g12330
OsAffx.31715.1.S1_at--674--9211Chr12:6778455..6778479 (25 bp)
TCCACTCAAGTCATTCAGTGTTGAT
LOC_Os12g12330
Target Sequence 
GTACATCTACCAAAGCTCAATCTCAAGCATCAAGAAAGAAGACTTGGCGTTGAAGGCAAAAGAAGAAGAGGAAGAAAGTT
ACAAGAACATGAAGGACAAGGAAGATGACTCAAGTGATGAAGAGGAATTGGCCACTTTCACCATCAAGCCGTCACCATCT
CCTACACTAAGGCTCTTCAACTACTCGAGTGATGACAACGCTCCTATATGTCTCATGGTTGAGCCTAAGGTACCTTCTCC
ACTCAAGTCATTCAGTGTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31715.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis