Browse Element(s) Details


OsAffx.31710.1.S1_x_at

Description tigr:9640.m01173
TID=OsAffx.31710.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AY062655 diacylglycerol kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1226010/11Diacylglycerol kinase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g12210NANA12+6702547..6705879transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g12220OsAffx.19623.1.S1_x_at11/1112+6709871..6711004hypothetical protein
LOC_Os12g12230OsAffx.19624.1.S1_at6/1112+6714309..6716015expressed protein
LOC_Os12g12240Os.52242.1.S1_at1/1112+6719650..6723790transposon protein, putative, Mariner sub-class
LOC_Os12g12250OsAffx.31660.3.S1_x_at10/1112+6724378..6726039hypothetical protein
LOC_Os12g12250OsAffx.31660.2.S1_x_at6/1112+6724378..6726039hypothetical protein
LOC_Os12g12250OsAffx.31660.1.S1_at5/1112+6724378..6726039hypothetical protein
LOC_Os12g12260Os.51035.1.S1_at11/1112+6728591..6733242Diacylglycerol kinase 1, putative, expressed
LOC_Os12g12260OsAffx.31710.1.S1_x_at10/1112+6728591..6733242Diacylglycerol kinase 1, putative, expressed
LOC_Os12g12270Os.20602.2.S1_x_at11/1112+6734459..6736639hAT family dimerisation domain containing protein
LOC_Os12g12280OsAffx.10645.1.S1_at2/1112+6743433..6743750hypothetical protein
LOC_Os12g12290OsAffx.31713.1.S1_at11/1112+6753995..6755660Exostosin family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007205biological_processprotein kinase C activation
GO:0009409biological_processresponse to cold
GO:0009611biological_processresponse to wounding
GO:0048364biological_processroot development
GO:0048366biological_processleaf development
GO:0004143molecular_functiondiacylglycerol kinase activity
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31710.1.S1_x_at--927--5471Chr12:6729960..6729984 (25 bp)
GAACATTCCTAGCTACATGGGCGGT
LOC_Os12g12260
OsAffx.31710.1.S1_x_at--310--3511Chr12:6729945..6729969 (25 bp)
CATGGGCGGTGTTGATCTTTGGCAA
LOC_Os12g12260
OsAffx.31710.1.S1_x_at--993--3871Chr12:6729855..6729879 (25 bp)
CTGTATATCTGGGACGTGGCATCTA
LOC_Os12g12260
OsAffx.31710.1.S1_x_at--414--2551Chr12:6729667..6729850 (25 bp)
AACTGCAGGTGGGACTCTCTAGAGC
LOC_Os12g12260
OsAffx.31710.1.S1_x_at--554--351Chr12:6729617..6729641 (25 bp)
ATAAGGTTGCATCTCCACAGTTCAT
LOC_Os12g12260
OsAffx.31710.1.S1_x_at--762--2131Chr12:6729601..6729625 (25 bp)
ACAGTTCATTCCCTGTTCAGGTTGA
LOC_Os12g12260
OsAffx.31710.1.S1_x_at--805--6251Chr12:6729578..6729602 (25 bp)
GATGGTGAGCCATGGATCCAGCCAC
LOC_Os12g12260
OsAffx.31710.1.S1_x_at--1040--1791Chr12:6729555..6729579 (25 bp)
ACCCGGGTGCCTTGAGATATCTCAT
LOC_Os12g12260
OsAffx.31710.1.S1_x_at--43--4771Chr12:6729085..6729109 (25 bp)
GCTGCTATCATGAGCGAGGTCCTCA
LOC_Os12g12260
OsAffx.31710.1.S1_x_at--445--9031Chr12:6728697..6729080 (25 bp)
TGCAGAGTGCAATGGGTTCAATGAG
LOC_Os12g12260
OsAffx.31710.1.S1_x_at--774--1331Chr12:6728116..6728140 (25 bp)
AGAGACGAATCAGGTTCATTTGCTT
NONE
Target Sequence 
GAACATTCCTAGCTACATGGGCGGTGTTGATCTTTGGCAAAACGACAATGAACATGATGATGATTTTGGTTTGCAATCCA
TGCATGACAAAATGCTTGAGGTTGTCTGTATATCTGGGACGTGGCATCTAGGAAAACTGCAGGTGGGACTCTCTAGAGCA
CACAGGCTAGCCCAAGGGAAAGTTATAAGGTTGCATCTCCACAGTTCATTCCCTGTTCAGGTTGATGGTGAGCCATGGAT
CCAGCCACCCGGGTGCCTTGAGATATCTCATCGTGGGCAGATGTTCATGTTGAGGAGGACATCCGAAGAACCCACCGGGC
ATGCCGCTGCTATCATGAGCGAGGTCCTCATGAATGCAGAGTGCAATGGGTTCAATGAGCATTGTAAGCTGTATCTAGGG
TGTATCGGTGGCCTATACAAAAGAACCAATTTTGCCAATTGCAAAACTGAAACAGAGACGAATCAGGTTCATTTGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31710.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis