Browse Element(s) Details


OsAffx.31660.3.S1_x_at

Description tigr:9640.m01172
TID=OsAffx.31660.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1225010/11hypothetical protein
LOC_Os12g093604/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g12200Os.47463.1.S1_x_at6/1112+6695684..6699381transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g12200Os.14491.2.S1_x_at5/1112+6695684..6699381transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g12210NANA12+6702547..6705879transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g12220OsAffx.19623.1.S1_x_at11/1112+6709871..6711004hypothetical protein
LOC_Os12g12230OsAffx.19624.1.S1_at6/1112+6714309..6716015expressed protein
LOC_Os12g12240Os.52242.1.S1_at1/1112+6719650..6723790transposon protein, putative, Mariner sub-class
LOC_Os12g12250OsAffx.31660.3.S1_x_at10/1112+6724378..6726039hypothetical protein
LOC_Os12g12250OsAffx.31660.2.S1_x_at6/1112+6724378..6726039hypothetical protein
LOC_Os12g12250OsAffx.31660.1.S1_at5/1112+6724378..6726039hypothetical protein
LOC_Os12g12260Os.51035.1.S1_at11/1112+6728591..6733242Diacylglycerol kinase 1, putative, expressed
LOC_Os12g12260OsAffx.31710.1.S1_x_at10/1112+6728591..6733242Diacylglycerol kinase 1, putative, expressed
LOC_Os12g12270Os.20602.2.S1_x_at11/1112+6734459..6736639hAT family dimerisation domain containing protein
LOC_Os12g12280OsAffx.10645.1.S1_at2/1112+6743433..6743750hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31660.3.S1_x_at--662--4711Chr12:6725735..6725759 (25 bp)
GCTGTTGGGATGTAGCGGCGGCGTC
LOC_Os12g12250
OsAffx.31660.3.S1_x_at--451--4711Chr12:6725670..6725694 (25 bp)
GCGGCGCCCGCGAATCTGATAAAGG
LOC_Os12g12250
OsAffx.31660.3.S1_x_at--550--3752Chr12:6725615..6725639 (25 bp)
CTCTTATTCTAATTCCGGCATCAAC
LOC_Os12g12250
OsAffx.31660.3.S1_x_at--240--4971Chr12:6725598..6725622 (25 bp)
GCATCAACAACTAGGGTTTTTGGCG
LOC_Os12g12250
OsAffx.31660.3.S1_x_at--337--3551Chr12:6725597..6725621 (25 bp)
CATCAACAACTAGGGTTTTTGGCGG
LOC_Os12g12250
OsAffx.31660.3.S1_x_at--773--10351Chr12:6725582..6725606 (25 bp)
TTTTTGGCGGCGGTATGCGTCGATT
LOC_Os12g12250
OsAffx.31660.3.S1_x_at--900--8352Chr12:6725574..6725598 (25 bp)
GGCGGTATGCGTCGATTGACTCAAA
LOC_Os12g12250
OsAffx.31660.3.S1_x_at--594--10671NONE
TTGACTCAAAGGACAATGTTGGTTG
NONE
OsAffx.31660.3.S1_x_at--199--312Chr12:6724625..6724649 (25 bp)
ATAGCGACCACACGGCACTGTTTGA
LOC_Os12g12250
OsAffx.31660.3.S1_x_at--551--1051Chr12:6724476..6724500 (25 bp)
AGGGGATATGCGCAAAATCCATATG
LOC_Os12g12250
OsAffx.31660.3.S1_x_at--77--8452Chr12:6724444..6724468 (25 bp)
TGGCCTAGAAGACCTCCTGCAAGAC
LOC_Os12g12250
Target Sequence 
GCTGTTGGGATGTAGCGGCGGCGTCGGAGGTTTGCAAGGCGGCTGATGTAATGCTCAAGGAGGTGGCGGCGCCCGCGAAT
CTGATAAAGGAGGGGACAGTGGAGGACGAGGCTGACCAGCCTCTTATTCTAATTCCGGCATCAACAACTAGGGTTTTTGG
CGGCGGTATGCGTCGATTGACTCAAAGGACAATGTTGGTTGACGATAGCGACCACACGGCACTGTTTGAGAAGAAGGCAA
GCGTCAAGCAAATCGGCATCGAGGAGATGAGGGGAAAAGCTAAGGATGTGAGCAGCGAGGAGGGAAACAGCGAGGAGGTG
AAGTCAAGCGACTATGATGAAGACATGGTCATTAGGGGATATGCGCAAAATCCATATGATGATAGTGGCCTAGAAGACCT
CCTGCAAGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31660.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis