Browse Element(s) Details


Os.50562.3.S1_x_at

Description gb:AK065655.1
DB_XREF= gi:32975673
TID=Os.50562.3
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50562 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033101E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013037J06, full insert sequence.
FL= gb:AK065655.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1238011/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g12350NANA12+6792728..6793183retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g12360Os.11813.1.S1_at11/1112+6798290..6805850transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g12370Os.8870.1.S1_s_at9/1112+6810024..6814077outer envelope protein, putative, expressed
LOC_Os12g12380Os.50562.3.S1_x_at11/1112+6814189..6819309transposon protein, putative, unclassified, expressed
LOC_Os12g12380Os.50562.1.S1_at10/1112+6814189..6819309transposon protein, putative, unclassified, expressed
LOC_Os12g12380Os.50562.2.S1_at9/1112+6814189..6819309transposon protein, putative, unclassified, expressed
LOC_Os12g12390Os.27497.1.S1_at10/1112+6820124..6821361transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g12400Os.47999.3.S1_x_at1/1112+6828160..6830764Zinc knuckle family protein
LOC_Os12g12410NANA12+6835475..6840040retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g12420NANA12+6840295..6841182retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g12429NANA12+6843871..6845114NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50562.3.S1_x_at--1087--1291Chr12:6817023..6817047 (25 bp)
AGATGCTACTTGTCAATCCATTACA
LOC_Os12g12380
Os.50562.3.S1_x_at--761--131Chr12:6817004..6817028 (25 bp)
ATTACAAGCCGTTACAATGTCCTGT
LOC_Os12g12380
Os.50562.3.S1_x_at--322--2991Chr12:6816989..6817013 (25 bp)
AATGTCCTGTGTGCTGATGCCATCA
LOC_Os12g12380
Os.50562.3.S1_x_at--521--7971Chr12:6816950..6816974 (25 bp)
GGATCTGCATCAAAGGCTGTGTATA
LOC_Os12g12380
Os.50562.3.S1_x_at--289--371Chr12:6816796..6816820 (25 bp)
ATCAATCTTTGCCAGATTTCTGGAC
LOC_Os12g12380
Os.50562.3.S1_x_at--313--9831Chr12:6816066..6816090 (25 bp)
TAAAATCTTCTAGGCCAGCTTCTTG
LOC_Os12g12380
Os.50562.3.S1_x_at--224--3271Chr12:6816040..6816064 (25 bp)
CAACTCTCGATCTCCAATCTGAATG
LOC_Os12g12380
Os.50562.3.S1_x_at--796--231Chr12:6816012..6816036 (25 bp)
ATATTTTTGTCTTCTCTTGGAGATG
LOC_Os12g12380
Os.50562.3.S1_x_at--330--6351Chr12:6815991..6816015 (25 bp)
GATGCGATGCAAATTACCACCATTG
LOC_Os12g12380
Os.50562.3.S1_x_at--734--7111Chr12:6815960..6815984 (25 bp)
GTCATGCTTGACATGCAATTTCCAT
LOC_Os12g12380
Os.50562.3.S1_x_at--997--3831Chr12:6815827..6815851 (25 bp)
CTGCTACTTCAGTATCAGTCTTGCC
LOC_Os12g12380
Target Sequence 
AGATGCTACTTGTCAATCCATTACAAGCCGTTACAATGTCCTGTGTGCTGATGCCATCAGATGTGCTGACAAAGGATCTG
CATCAAAGGCTGTGTATAAAGCAGCAAAAGACATCTTACAGAAGGCATATGAAGAAATCATTGCCTATGAAAGAAATCCT
GGCAGAGGATTACAAAGGGATGCTATAAACATCAATGAGGATATCACAATAGATGATACCATGAATGATCAATCTTTGCC
AGATTTCTGGACAAAAGGAACCTAAAATCTTCTAGGCCAGCTTCTTGGCAACTCTCGATCTCCAATCTGAATGTATATAT
TTTTGTCTTCTCTTGGAGATGCGATGCAAATTACCACCATTGCATGGTGTCATGCTTGACATGCAATTTCCATGTTGAAT
TGACCAGTGGAGAACAGCATATGGACCAAGATGAAAAGAGTTTCCACCGATGGTAAATGAAAAATGTTATTATATGACTA
TATGCTCTTTAATTTTATTTTCTGCTACTTCAGTATCAGTCTTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50562.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis