Browse Element(s) Details


Os.27497.1.S1_at

Description gb:CB674881
DB_XREF= gi:29678606
DB_XREF=OSJNEe10C24.r
CLONE=OSJNEe10C24
TID=Os.27497.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.27497 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1239010/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g12360Os.11813.1.S1_at11/1112+6798290..6805850transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g12370Os.8870.1.S1_s_at9/1112+6810024..6814077outer envelope protein, putative, expressed
LOC_Os12g12380Os.50562.3.S1_x_at11/1112+6814189..6819309transposon protein, putative, unclassified, expressed
LOC_Os12g12380Os.50562.1.S1_at10/1112+6814189..6819309transposon protein, putative, unclassified, expressed
LOC_Os12g12380Os.50562.2.S1_at9/1112+6814189..6819309transposon protein, putative, unclassified, expressed
LOC_Os12g12390Os.27497.1.S1_at10/1112+6820124..6821361transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g12400Os.47999.3.S1_x_at1/1112+6828160..6830764Zinc knuckle family protein
LOC_Os12g12410NANA12+6835475..6840040retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g12420NANA12+6840295..6841182retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g12429NANA12+6843871..6845114NA
LOC_Os12g12440OsAffx.32166.1218.S1_x_at6/1112+6845960..6847222hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27497.1.S1_at--1117--6451Chr12:6820713..6820737 (25 bp)
GATAAACCGGAGTCTACGTTCACAA
LOC_Os12g12390
Os.27497.1.S1_at--252--6471Chr12:6820667..6820691 (25 bp)
GATAATGCCATCTATTCCACTGTCA
LOC_Os12g12390
Os.27497.1.S1_at--945--5591Chr12:6820638..6820662 (25 bp)
GAAATTTGCTATTGCTACTATGCTG
LOC_Os12g12390
Os.27497.1.S1_at--621--5911Chr12:6820592..6820616 (25 bp)
GAGCTTGCAACTGTACGTATGGTAT
LOC_Os12g12390
Os.27497.1.S1_at--568--10111Chr12:6820575..6820599 (25 bp)
TATGGTATGGGCTTGGTTCCGTGAA
LOC_Os12g12390
Os.27497.1.S1_at--155--7111Chr12:6820432..6820543 (25 bp)
GTCAGAGGTTTGATTTTCCATGTGC
LOC_Os12g12390
Os.27497.1.S1_at--795--3391Chr12:6820380..6820404 (25 bp)
CAGCTACTACATCACGTCTGCAAGT
LOC_Os12g12390
Os.27497.1.S1_at--1132--7151Chr12:6820365..6820389 (25 bp)
GTCTGCAAGTATACCCACTGCCTAT
LOC_Os12g12390
Os.27497.1.S1_at--742--6131Chr12:6820211..6820235 (25 bp)
GAGGGACAGACTCATCCATGAAGAT
LOC_Os12g12390
Os.27497.1.S1_at--465--10771Chr12:6820134..6820158 (25 bp)
TTGATCCTGCGGGTGAATTCTACTA
LOC_Os12g12390
Os.27497.1.S1_at--238--5751Chr12:6820108..6820132 (25 bp)
GACGGGTAGTGTCGGTCCTTCTTCT
NONE
Target Sequence 
GATAAACCGGAGTCTACGTTCACAAAGATTTTTGAAGTGATAGACAGATAATGCCATCTATTCCACTGTCATTATGAAAT
TTGCTATTGCTACTATGCTGATCTTAGATAATAATTAATCAGAGCTTGCAACTGTACGTATGGTATGGGCTTGGTTCCGT
GAATTGGTCACAGGGTCTTAGAAAGAAAAACTTAGTCAGAGGTTTGATTTTCCATGTGCAAAGCAGGACCAGGGGAATAA
CTTCTGCAGCTACTACATCACGTCTGCAAGTATACCCACTGCCTATCAACCCAAATCTACGGTAACAAGGAATTGAATAT
TATTTATATGAGGGACAGACTCATCCATGAAGATTTTATAAGGGCAGTCCAAGAACAACTGATGGGTTTTATCAACGAAC
AAATTATTGATCCTGCGGGTGAATTCTACTACGACGGGTAGTGTCGGTCCTTCTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27497.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis