Browse Element(s) Details


Os.50562.2.S1_at

Description gb:AK102652.1
DB_XREF= gi:32987861
TID=Os.50562.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50562 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033101E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033101E02, full insert sequence.
FL= gb:AK102652.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g123809/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g12350NANA12+6792728..6793183retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g12360Os.11813.1.S1_at11/1112+6798290..6805850transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g12370Os.8870.1.S1_s_at9/1112+6810024..6814077outer envelope protein, putative, expressed
LOC_Os12g12380Os.50562.3.S1_x_at11/1112+6814189..6819309transposon protein, putative, unclassified, expressed
LOC_Os12g12380Os.50562.1.S1_at10/1112+6814189..6819309transposon protein, putative, unclassified, expressed
LOC_Os12g12380Os.50562.2.S1_at9/1112+6814189..6819309transposon protein, putative, unclassified, expressed
LOC_Os12g12390Os.27497.1.S1_at10/1112+6820124..6821361transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g12400Os.47999.3.S1_x_at1/1112+6828160..6830764Zinc knuckle family protein
LOC_Os12g12410NANA12+6835475..6840040retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g12420NANA12+6840295..6841182retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g12429NANA12+6843871..6845114NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50562.2.S1_at--249--1211NONE
AGTTTCCACCGATGGATTCGGATCA
NONE
Os.50562.2.S1_at--94--8191Chr12:6814695..6814719 (25 bp)
GGAAGCTCCCTTTTGAAATGTGCAT
LOC_Os12g12380
Os.50562.2.S1_at--182--2991Chr12:6814679..6814703 (25 bp)
AATGTGCATCAAATCCACCCTGCTT
LOC_Os12g12380
Os.50562.2.S1_at--1002--3831Chr12:6814660..6814684 (25 bp)
CTGCTTGCCAACTTTAATCCTTGAG
LOC_Os12g12380
Os.50562.2.S1_at--166--6451Chr12:6814636..6814660 (25 bp)
GATCACTGCGCCTATGAGATTCATT
LOC_Os12g12380
Os.50562.2.S1_at--578--10051Chr12:6814583..6814607 (25 bp)
TAGTTGTTCGTCAGACATCAGCCGT
LOC_Os12g12380
Os.50562.2.S1_at--1090--3411Chr12:6814572..6814596 (25 bp)
CAGACATCAGCCGTTGTTGCATCAA
LOC_Os12g12380
Os.50562.2.S1_at--386--8191Chr12:6814367..6814391 (25 bp)
GGAAGCTGTGCAACCATTGATTACT
LOC_Os12g12380
Os.50562.2.S1_at--608--1491Chr12:6814300..6814324 (25 bp)
AGCAAAACCAGTGTAGCCTATGTCA
LOC_Os12g12380
Os.50562.2.S1_at--1085--6031Chr12:6814238..6814262 (25 bp)
GAGATCTGTATCGTTAACCTTGTAA
LOC_Os12g12380
Os.50562.2.S1_at--985--2311Chr12:6814155..6814179 (25 bp)
AAAGGTGTCCTGTTTCATCATAGTT
NONE
Target Sequence 
AGTTTCCACCGATGGATTCGGATCAACAGCAACAATATGGGTTGAGACTTGGAAGCTCCCTTTTGAAATGTGCATCAAAT
CCACCCTGCTTGCCAACTTTAATCCTTGAGATCACTGCGCCTATGAGATTCATTTGGGCATTTGGCCATTATGGCTAGTT
GATAGTTGTTCGTCAGACATCAGCCGTTGTTGCATCAACATCTCAGATGTTCAGAACGCACTCAAGTATCAGGAGTACTG
ACGCAATCAAACAATACTTCCAAAGATTTGGATTAAGACTAGCCTAAATGATGCTTGAACTGAAATTAGTACTGAGTGTT
CATGGAGATGGAGGCGAGGGTTGTGATTCTTTGATGATAGGATTAGGCTGTTAGGGTAGGAAGCTGTGCAACCATTGATT
ACTTCTTTCTTTTTCTTTTTGTCCAAAGATGAGTTAGTAGAAGGAAGCAAAACCAGTGTAGCCTATGTCAATGTTGTTAA
TGAATTGTAAATTGAGGTGAAATGGTTGAGATCTGTATCGTTAACCTTGTAAAAGGTGTCCTGTTTCATCATAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50562.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis