Browse Element(s) Details


Os.50572.1.S1_at

Description gb:AK121900.1
DB_XREF= gi:37991523
TID=Os.50572.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50572 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033105G16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033105G16, full insert sequence.
FL= gb:AK121900.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3692011/11calmodulin-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g36900OsAffx.7815.1.S1_at11/1112+22583439..22588295fiber protein Fb2, putative, expressed
LOC_Os12g36910Os.17887.1.S1_at10/1112+22595349..22599454calmodulin-binding protein, putative, expressed
LOC_Os12g36920Os.50572.1.S1_at11/1112+22602273..22606636calmodulin-binding protein, putative, expressed
LOC_Os12g36920Os.24180.1.A1_s_at11/1112+22602273..22606636calmodulin-binding protein, putative, expressed
LOC_Os12g36930Os.51798.1.S1_at1/1112+22607943..22609245hypothetical protein
LOC_Os12g36940Os.9764.1.S1_at11/1112+22614559..22622705calmodulin-binding protein, putative, expressed
LOC_Os12g36940Os.52150.1.S1_at1/1112+22614559..22622705calmodulin-binding protein, putative, expressed
LOC_Os12g36950Os.27769.1.S1_a_at11/1112+22622813..22629039CTP synthase, putative, expressed
LOC_Os12g36960NANA12+22629276..22629782hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50572.1.S1_at--41--9051Chr12:22605718..22605742 (25 bp)
TGCAGCACCTCTAATCCTAATGATG
LOC_Os12g36920
Os.50572.1.S1_at--228--7391Chr12:22605742..22605763 (22 bp)
GTGAGCACACATGATTATCCAGATC
LOC_Os12g36920
Os.50572.1.S1_at--509--6551Chr12:22605754..22605973 (25 bp)
GATTATCCAGATCAAGCACCAACGC
LOC_Os12g36920
Os.50572.1.S1_at--11--2611Chr12:22605969..22605993 (25 bp)
AACGCCATTTCCTGATTGGCAACAA
LOC_Os12g36920
Os.50572.1.S1_at--731--911Chr12:22606003..22606027 (25 bp)
AGGCTGATGAGCTCTTCTGATACAA
LOC_Os12g36920
Os.50572.1.S1_at--1049--4811Chr12:22606013..22606166 (25 bp)
GCTCTTCTGATACAATCGACTGGCC
LOC_Os12g36920
Os.50572.1.S1_at--144--9371Chr12:22606162..22606181 (20 bp)
TCGACTGGCCGAGCTTTGAGAGGAT
LOC_Os12g36920
Os.50572.1.S1_at--1069--6151Chr12:22606176..22606200 (25 bp)
GAGGATTGTATTGGGTGGCACCTCA
LOC_Os12g36920
Os.50572.1.S1_at--734--8251Chr12:22606192..22606216 (25 bp)
GGCACCTCAGAGGAATCGAGTTCTG
LOC_Os12g36920
Os.50572.1.S1_at--379--4071Chr12:22606208..22606232 (25 bp)
CGAGTTCTGCTCAACACCAAGTTCA
LOC_Os12g36920
Os.50572.1.S1_at--497--3811Chr12:22606253..22606277 (25 bp)
CTCCTGCTACATCGCCATGGGTGGC
LOC_Os12g36920
Target Sequence 
TGCAGCACCTCTAATCCTAATGATGTGAGCACACATGATTATCCAGATCAAGCACCAACGCCATTTCCTGATTGGCAACA
AGATCTCCAAAGGCTGATGAGCTCTTCTGATACAATCGACTGGCCGAGCTTTGAGAGGATTGTATTGGGTGGCACCTCAG
AGGAATCGAGTTCTGCTCAACACCAAGTTCATCAACTCCATGAAAGCATGCCTCCTGCTACATCGCCATGGGTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50572.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis