Browse Element(s) Details


Os.50573.1.S1_at

Description gb:AK121904.1
DB_XREF= gi:37991527
TID=Os.50573.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50573 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033105I05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033105I05, full insert sequence.
FL= gb:AK121904.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0298010/11expressed protein
LOC_Os05g126701/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g02940Os.3895.1.S1_at11/115+1062103..1064141Calcium-transporting ATPase 1, endoplasmic reticulum-type, putative, expressed
LOC_Os05g02950NANA5+1070454..1075388retrotransposon protein, putative, unclassified
LOC_Os05g02960Os.28943.1.S1_x_at1/115+1076008..1079030retrotransposon protein, putative, unclassified
LOC_Os05g02970Os.52398.1.S1_at11/115+1081423..1083255expressed protein
LOC_Os05g02980Os.50573.1.S1_at10/115+1086849..1088051expressed protein
LOC_Os05g02990Os.12004.1.S1_at11/115+1093800..1096088expressed protein
LOC_Os05g03000Os.49718.1.S1_at11/115+1105037..1110434Integral membrane protein TerC family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50573.1.S1_at--816--4552Chr05:1087262..1087286 (25 bp)
GCGCCATTGCGCACTGCAAGAGGTC
LOC_Os05g02980
Os.50573.1.S1_at--700--5411Chr05:1087208..1087232 (25 bp)
GAAGCGTCAGCGACGTGGTGTTCTA
LOC_Os05g02980
Os.50573.1.S1_at--908--7471Chr05:1087194..1087218 (25 bp)
GTGGTGTTCTACTCGGTAACCAACA
LOC_Os05g02980
Os.50573.1.S1_at--697--2471Chr05:1087173..1087197 (25 bp)
AACACGCCCAGGGTGTCATCTGTCG
LOC_Os05g02980
Os.50573.1.S1_at--948--3591Chr05:1087083..1087107 (25 bp)
CATTCTCTTCTTGATTTGACCGTCA
LOC_Os05g02980
Os.50573.1.S1_at--322--5831Chr05:1087066..1087090 (25 bp)
GACCGTCATGGCTCATGAGGTTGAC
LOC_Os05g02980
Os.50573.1.S1_at--85--10551Chr05:1086998..1087022 (25 bp)
TTCATTTTCTGTTTTGGTTGTTCCA
LOC_Os05g02980
Os.50573.1.S1_at--94--6651Chr05:1086982..1087006 (25 bp)
GTTGTTCCAGAGTCCCTGTGAAGAT
LOC_Os05g02980
Os.50573.1.S1_at--1148--6551Chr05:1086924..1086948 (25 bp)
GATTCATGGACTCTTTTCTTCTTTG
LOC_Os05g02980
Os.50573.1.S1_at--753--8811Chr05:1086901..1086925 (25 bp)
TGATTCTCCCCTTCTTGTTTTGTTG
LOC_Os05g02980
Os.50573.1.S1_at--80--671Chr05:1086849..1086873 (25 bp)
ATGAATCTCTCTGTTCATTTGTTTC
NONE
Target Sequence 
GCGCCATTGCGCACTGCAAGAGGTCGCAGCACCAGCACCTACAGCAGCAGAGGAGAAGCGTCAGCGACGTGGTGTTCTAC
TCGGTAACCAACACGCCCAGGGTGTCATCTGTCGCCGCCGCCGCCGGCGGCGAGGTCGCCCAGGGGGAGAGGCAGGAGAT
GTGCAGGGGATGATGATTTCATTCTCTTCTTGATTTGACCGTCATGGCTCATGAGGTTGACAAGAACAGAAGAAGAAAAA
GAAGACCATATTTTTTTTCTTGGTTTCATTTTCTGTTTTGGTTGTTCCAGAGTCCCTGTGAAGATGAGCAATGTTTGTTG
TGAATGAATTGCTGTGATGATTCATGGACTCTTTTCTTCTTTGATTCTCCCCTTCTTGTTTTGTTGGACCAAAGGATTTT
AGCTGTATGATATATGAATCTCTCTGTTCATTTGTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50573.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis