Browse Element(s) Details


Os.50576.1.S1_at

Description gb:AK121910.1
DB_XREF= gi:37991533
TID=Os.50576.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50576 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033069I17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033105O17, full insert sequence.
FL= gb:AK121910.1 gb:AK101846.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3336011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g33330Os.37531.1.S1_at8/116+19414237..19417330expressed protein
LOC_Os06g33340Os.49603.1.S1_at11/116+19417815..19420857expressed protein
LOC_Os06g33340Os.16076.1.S1_s_at11/116+19417815..19420857expressed protein
LOC_Os06g33350Os.56283.1.S1_at11/116+19426546..19430026expressed protein
LOC_Os06g33360Os.50576.1.S1_at11/116+19433825..19438090NB-ARC domain containing protein, expressed
LOC_Os06g33360Os.50576.1.S2_at11/116+19433825..19438090NB-ARC domain containing protein, expressed
LOC_Os06g33370Os.10278.1.S1_at11/116+19438053..19440383expressed protein
LOC_Os06g33370OsAffx.4987.1.S1_at3/116+19438053..19440383expressed protein
LOC_Os06g33370Os.49603.1.S1_at1/116+19438053..19440383expressed protein
LOC_Os06g33380OsAffx.15711.1.S1_at11/116+19442466..19442869hypothetical protein
LOC_Os06g33390OsAffx.27913.1.S1_at11/116+19444693..19445286expressed protein
LOC_Os06g33400OsAffx.27914.1.S1_at11/116+19447322..19447750hypothetical protein
LOC_Os06g33410OsAffx.27915.1.S1_at8/116+19453210..19454390hypothetical protein
LOC_Os06g33420OsAffx.15712.1.S1_at10/116+19456390..19459812transposase, putative

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50576.1.S1_at--1037--51Chr06:19436055..19436079 (25 bp)
ATTGCTGAGGAAGTCGGTCATGTTT
LOC_Os06g33360
Os.50576.1.S1_at--1005--2471Chr06:19436089..19436113 (25 bp)
AACACCTTTCTGATGTTGACTCGAG
LOC_Os06g33360
Os.50576.1.S1_at--131--31Chr06:19436222..19436246 (25 bp)
ATTGGCCATTGTTACAACGTCTAGT
LOC_Os06g33360
Os.50576.1.S1_at--651--1951Chr06:19436272..19436296 (25 bp)
ACTGGTCTGAGTTGTATCGGTCAAT
LOC_Os06g33360
Os.50576.1.S1_at--934--491Chr06:19436287..19436311 (25 bp)
ATCGGTCAATTGCTCTTGGCGCAAA
LOC_Os06g33360
Os.50576.1.S1_at--474--8471Chr06:19436303..19436327 (25 bp)
TGGCGCAAAAGACAACCGGCATGTG
LOC_Os06g33360
Os.50576.1.S1_at--790--6831Chr06:19436356..19436380 (25 bp)
GTTTCTATCATTTGCCTTATCATCT
LOC_Os06g33360
Os.50576.1.S1_at--936--7011Chr06:19436396..19436420 (25 bp)
GTACTTGAGCGCATTTCCAGAGGAT
LOC_Os06g33360
Os.50576.1.S1_at--49--7351Chr06:19436507..19436531 (25 bp)
GTGAGAGGGTTACTTCAACGAGCTT
LOC_Os06g33360
Os.50576.1.S1_at--1116--2371Chr06:19436535..19436559 (25 bp)
AAACGACGTATGATCATGCCAATAG
LOC_Os06g33360
Os.50576.1.S1_at--109--2771Chr06:19436572..19436596 (25 bp)
AAGACTACATACTAGGCTGTCGTGT
LOC_Os06g33360
Target Sequence 
ATTGCTGAGGAAGTCGGTCATGTTTATGAAATAAAACACCTTTCTGATGTTGACTCGAGAAGGTTATTGCATAGAAGAAT
ATTAAGTGGTGAAGACCAATGCCCCGNTGATGATTATGATTTGGAAGAGGTTTGTGATGAAATTTTGAGGAAATGTGAAG
GGGTACCATTGGCCATTGTTACAACGTCTAGTTTGTTGGAGAGTAAACCAAGGGAGGACTGGTCTGAGTTGTATCGGTCA
ATTGCTCTTGGCGCAAAAGACAACCGGCATGTGGATAATACTATGAAGATATNGTCTCTTAGTTTCTATCATTTGCCTTA
TCATCTAAGAACATGCTTATTGTACTTGAGCGCATTTCCAGAGGATTATTTAATTGGTAAACAAACATTGATATGGAGGT
GGATAGGTGAAGGTTTTGTCTGTAAGGAAGAAGGAAGAGACTTATATGAGGTGTGAGAGGGTTACTTCAACGAGCTTGTA
AAACGACGTATGATCATGCCAATAGAGGCAGAGAATGAAGACTACATACTAGGCTGTCGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50576.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis