Browse Element(s) Details


Os.50619.1.S1_at

Description gb:AK122155.1
DB_XREF= gi:37991801
TID=Os.50619.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50619 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033145E22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033145E22, full insert sequence.
FL= gb:AK122155.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5844011/11expressed protein
LOC_Os10g282801/11hypothetical protein
LOC_Os03g557041/11expressed protein
LOC_Os03g578301/11hypothetical protein
LOC_Os07g043901/11hypothetical protein
LOC_Os04g213601/11hypothetical protein
LOC_Os06g230901/11hypothetical protein
LOC_Os09g016701/11peptidyl-prolyl cis-trans isomerase, FKBP-type family protein
LOC_Os03g551891/11
LOC_Os12g190401/11expressed protein
LOC_Os05g234601/11hypothetical protein
LOC_Os07g161701/11hypothetical protein
LOC_Os10g074601/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g111201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g58420Os.3766.1.S1_at11/111+34093832..34094932AP2 domain containing protein, expressed
LOC_Os01g58430OsAffx.23839.1.S1_at11/111+34097009..34097629hypothetical protein
LOC_Os01g58440Os.50619.1.S1_x_at11/111+34105154..34106470expressed protein
LOC_Os01g58440Os.50619.1.S1_at11/111+34105154..34106470expressed protein
LOC_Os01g58450OsAffx.9495.1.S1_at10/111+34115539..34116995retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g58450OsAffx.21754.1.S1_x_at2/111+34115539..34116995retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g58459Os.7853.1.S1_at11/111+34117138..34120938expressed protein
LOC_Os01g58459Os.7853.1.S2_a_at11/111+34117138..34120938expressed protein
LOC_Os01g58459Os.7853.2.S1_x_at10/111+34117138..34120938expressed protein
LOC_Os01g58459Os.51796.1.S1_at7/111+34117138..34120938expressed protein
LOC_Os01g58470Os.27717.1.S1_a_at11/111+34130010..34132240expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
GO:0016020cellular_componentmembrane
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
GO:0005516molecular_functioncalmodulin binding
GO:0005528molecular_functionFK506 binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50619.1.S1_at--1111--3931Chr01:34105955..34105979 (25 bp)
CGGCGGCCGCAACCAGGAGGATGAT
LOC_Os01g58440
Os.50619.1.S1_at--230--971Chr01:34106034..34106058 (25 bp)
AGGAGCCCGGAGGAGTCTGTCTCCG
LOC_Os01g58440
Os.50619.1.S1_at--82--1832Chr01:34106119..34106143 (25 bp)
ACGCCTTGCGCGGTTGCGCGAGAGA
LOC_Os01g58440
Os.50619.1.S1_at--883--2732Chr09:9860959..9860983 (25 bp)
AAGAAAATGCTAACTGGGTTGCCAC
NONE
Os.50619.1.S1_at--1106--2432Chr09:9860962..9860985 (24 bp)
AAAATGCTAACTGGGTTGCCACGCG
NONE
Os.50619.1.S1_at--953--9793Chr04:18126356..18126378 (23 bp)
TAACTGGGTTGCCACGCGTACGCCA
NONE
Os.50619.1.S1_at--1121--435110Chr12:2670785..2671270 (25 bp)
GCCACGCGTACGCCACGTAGTACAA
NONE
Os.50619.1.S1_at--572--7711Chr01:34106311..34106335 (25 bp)
GGGTGAGTGATATCCGGTTTTCAGA
LOC_Os01g58440
Os.50619.1.S1_at--899--6111Chr01:34106315..34106339 (25 bp)
GAGTGATATCCGGTTTTCAGATTCA
LOC_Os01g58440
Os.50619.1.S1_at--925--8831Chr01:34106318..34106342 (25 bp)
TGATATCCGGTTTTCAGATTCAGGG
LOC_Os01g58440
Os.50619.1.S1_at--981--2531Chr01:34106425..34106449 (25 bp)
AACTAATGATGTAAGCTTTAATGTA
LOC_Os01g58440
Target Sequence 
CGGCGGCCGCAACCAGGAGGATGATGACGACGACGAGGAGGAGTAATCCGGCGAGGGGCACGTCCTCAAGGCCTGGGCGA
GGAGCCCGGAGGAGTCTGTCTCCGCCGCCGACTGCCCGGGCGAGCTCCACCTCCGCCTCCGCCACCAGCCGATCCGCGCC
GTGCACGCCTTGCGCGGTTGCGCGAGAGAGAGAGAGAAGAGAGAGAGAGAGGGGAAGAGGGGAAGAAGGGATGACATGTG
GGTCCCACCATTATTTTAAAAGAAAATGCTAACTGGGTTGCCACGCGTACGCCACGTAGTACAAAACCACTCTGGATTCG
GTCGAGGGGGGTAATTCGTGCGGTATAAAAAGTTCGGGGTGAGTGATATCCGGTTTTCAGATTCAGGGGTAATTCGGTTG
ACCGTGATAGTTTAGGGGTGTAATTCGTACTTTTTCCATTACAAAATTATACATAGGAGAAAGATAATAAAACTAATGAT
GTAAGCTTTAATGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50619.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis