Browse Element(s) Details


Os.50764.1.S1_at

Description gb:AK101397.1
DB_XREF= gi:32986606
TID=Os.50764.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50764 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033037B14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033037B14, full insert sequence.
FL= gb:AK101397.1 gb:AK058410.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1131010/11Plastocyanin-like domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g11260NANA6+5904505..590488512-oxophytodienoate reductase 1, putative, expressed
LOC_Os06g11270Os.15852.1.S1_at1/116+5907096..5908469UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os06g11280Os.8778.1.S1_a_at7/116+5911375..591328612-oxophytodienoate reductase 2, putative
LOC_Os06g11290Os.8778.1.S1_a_at11/116+5917119..591867912-oxophytodienoate reductase 2, putative, expressed
LOC_Os06g11300Os.54009.1.S1_at11/116+5920696..5922665pentatricopeptide, putative, expressed
LOC_Os06g11300OsAffx.20919.1.S1_x_at1/116+5920696..5922665pentatricopeptide, putative, expressed
LOC_Os06g11310Os.50764.1.S1_at10/116+5929406..5930985Plastocyanin-like domain containing protein, expressed
LOC_Os06g11320Os.15219.1.S1_at11/116+5932790..5938506peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
LOC_Os06g11330Os.49837.1.S1_a_at9/116+5951600..5962310SRF-type transcription factor family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50764.1.S1_at--551--2111Chr06:5929941..5929965 (25 bp)
ACATGATGCGGAACGCGGCGGACTA
LOC_Os06g11310
Os.50764.1.S1_at--311--8131Chr06:5929922..5929946 (25 bp)
GGACTACCAGTCGTGCAACCTCAAG
LOC_Os06g11310
Os.50764.1.S1_at--190--1871Chr06:5929851..5929875 (25 bp)
ACGAGTTCGTCCTCCGGAAGCGCAA
LOC_Os06g11310
Os.50764.1.S1_at--94--591Chr06:5929792..5929816 (25 bp)
ATCCACTGCACCATGGGCCAGATGA
LOC_Os06g11310
Os.50764.1.S1_at--680--9071Chr06:5929636..5929660 (25 bp)
TGCTAGCCTACGTCGATCTTCTTCT
LOC_Os06g11310
Os.50764.1.S1_at--689--4291Chr06:5929597..5929621 (25 bp)
CCTTCTGGGAGTTCTGGTTCGATAT
LOC_Os06g11310
Os.50764.1.S1_at--389--271Chr06:5929518..5929542 (25 bp)
ATATGTCTAATTGTGTTGCGTTGCG
LOC_Os06g11310
Os.50764.1.S1_at--217--10711Chr06:5929503..5929527 (25 bp)
TTGCGTTGCGTGTGGTGTATTTGTA
LOC_Os06g11310
Os.50764.1.S1_at--293--51Chr06:5929442..5929466 (25 bp)
ATTGTACTGCGCATGTTCGTGGCGT
LOC_Os06g11310
Os.50764.1.S1_at--687--3991Chr06:5929425..5929449 (25 bp)
CGTGGCGTGTGTTGATTTTTGTATA
LOC_Os06g11310
Os.50764.1.S1_at--508--8771Chr06:5929406..5929430 (25 bp)
TGTATATATGCAGTCGCTTTGTCTC
NONE
Target Sequence 
ACATGATGCGGAACGCGGCGGACTACCAGTCGTGCAACCTCAAGGCGGCGAAGCTGGTGGCCAACGTGATGCAGGGCGCC
GGGTCGGGCTACGAGTTCGTCCTCCGGAAGCGCAAGCCCCACTACTTCGTCTGCGGCGAGCGCGGCGGCATCCACTGCAC
CATGGGCCAGATGAAGTTCATCGTCAAGCCCAAGAGCTCCGCCTGCCGCGACGACTGACCCGGCCCCCGCCCACCCCTCT
CCGCCGCCGGCCGCCGGCCGCCGCCACCGAGATGTTGGGTTGGTCGCCGCCGGCCATGGTGCGGCTGCTAGCCTACGTCG
ATCTTCTTCTTCTTCTGCATGCCACCTTCTGGGAGTTCTGGTTCGATATCAGAACATCATTGTGCTTTGATAATATTGTA
AGTTATTAATTGCAATATATACTATATGTCTAATTGTGTTGCGTTGCGTGTGGTGTATTTGTATGGGTCATTCGGTTGAA
ATAAACGATCGAGGGATTAATTGTACTGCGCATGTTCGTGGCGTGTGTTGATTTTTGTATATATGCAGTCGCTTTGTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50764.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis