Browse Element(s) Details


Os.50769.1.A1_at

Description gb:AK058425.1
DB_XREF= gi:32968443
TID=Os.50769.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.50769 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-015-E01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-015-E01, full insert sequence.
FL= gb:AK058425.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g030807/11expressed protein
LOC_Os06g031205/11Aspartic proteinase nepenthesin-2 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g03030OsAffx.27434.1.S1_at11/116+1111554..1112189expressed protein
LOC_Os06g03040OsAffx.27435.1.S1_at11/116+1115676..1116332hypothetical protein
LOC_Os06g03050OsAffx.15240.1.S1_at11/116+1124359..1126805expressed protein
LOC_Os06g03059Os.52099.1.S1_at11/116+1127840..1128809expressed protein
LOC_Os06g03070OsAffx.27437.1.S1_at11/116+1131268..1131867hypothetical protein
LOC_Os06g03080Os.50769.1.A1_at7/116+1136135..1137863expressed protein
LOC_Os06g03090NANA6+1141381..1142186hypothetical protein
LOC_Os06g03099Os.52099.1.S1_at7/116+1142888..1143568hypothetical protein
LOC_Os06g03110OsAffx.27437.1.S1_at10/116+1144639..1145184hypothetical protein
LOC_Os06g03120Os.50769.1.A1_at5/116+1152607..1154129Aspartic proteinase nepenthesin-2 precursor, putative, expressed
LOC_Os06g03130NANA6+1162379..1162878retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0003677molecular_functionDNA binding
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50769.1.A1_at--1023--7752Chr06:1153766..1153790 (25 bp)
GGTGATGGACTCGAGCGTGATCATC
LOC_Os06g03120
Os.50769.1.A1_at--509--9372Chr06:1153776..1153800 (25 bp)
TCGAGCGTGATCATCACGCAGCTGC
LOC_Os06g03120
Os.50769.1.A1_at--1081--9052Chr06:1153893..1153917 (25 bp)
TGCTACGACTTCGTCCGGTTCACGA
LOC_Os06g03120
Os.50769.1.A1_at--413--5692Chr06:1153899..1153923 (25 bp)
GACTTCGTCCGGTTCACGAGCGTGA
LOC_Os06g03120
Os.50769.1.A1_at--214--1392Chr06:1154065..1154089 (25 bp)
AGACGCACGAGGTGCTCTACGACGT
LOC_Os06g03120
Os.50769.1.A1_at--611--6913Chr06:1154194..1154218 (25 bp)
GTATGTCACGGTATCAAATTGTTTT
NONE
Os.50769.1.A1_at--1111--3091Chr06:1154276..1154299 (24 bp)
AATTTGGTACCGCACGTATTAGTAT
NONE
Os.50769.1.A1_at--173--4231Chr06:1154284..1154308 (25 bp)
CCGCACGTATTAGTATTTGGGATCG
NONE
Os.50769.1.A1_at--1014--211Chr06:1154298..1154322 (25 bp)
ATTTGGGATCGATCAACCTGCTTAA
NONE
Os.50769.1.A1_at--1008--2612Chr06:1154312..1154336 (25 bp)
AACCTGCTTAATTTACATCCCTATC
NONE
Os.50769.1.A1_at--63--10352Chr06:1154323..1154348 (25 bp)
TTTACATCCCTATCTATCCAAATAA
NONE
Target Sequence 
GGTGATGGACTCGAGCGTGATCATCACGCAGCTGCCGCCGACGGCGTACAGGGCGCTGCGGCTGGCGTTCCGGAGCGCCA
TGGCGGCGTACCCGCGGGTGGCGGGAGGGAGGGCCGGGCTGGACNCCTGCTACGACTTCGTCCGGTTCACGAGCGTGACG
GTGCCGGCGGTGTCGCTGGTGTTCGACGGCGGCNCGNTGNTGAGGCTGGACGCGATGGGAGTCATGGTGGAGGGGTGCCT
CGCGTTCGTGCCGACGCCGGGAGACTTCGCGCTCGGNTTCATCGGGAACGTGCAGCAGCAGACGCACGAGGTGCTCTACG
ACGTCGNCGGCGGCTCCGTCGGCTTCCGCCGTGGCGCCTGCTNNNGACGACCGCACCTTGTGATCGACCNGNTTAATTTG
AGATTTGCTNNGGTCCAACAAAAATACCGTATGTCACGGTATCAAATTGTTTTTTATCATTGGATCTAGTTGGATATGAT
GGATATTAATATATCCAACGATCAAAAATAATTTGGTACCGCACGTATTAGTATTTGGGATCGATCAACCTGCTTAATTT
ACATCCCTATCTATCCAAATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50769.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis