Browse Element(s) Details


OsAffx.27434.1.S1_at

Description tigr:9634.m00208
TID=OsAffx.27434.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0303011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g02949NANA6+1087381..1088185NA
LOC_Os06g02960Os.52298.1.S1_at11/116+1089059..1091611expressed protein
LOC_Os06g02970NANA6+1092764..1093351retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g02980OsAffx.30475.9.S1_s_at11/116+1094473..1095463ATP synthase F1, epsilon subunit family protein
LOC_Os06g02980OsAffx.30475.1.S1_s_at8/116+1094473..1095463ATP synthase F1, epsilon subunit family protein
LOC_Os06g02980OsAffx.30475.5.S1_x_at4/116+1094473..1095463ATP synthase F1, epsilon subunit family protein
LOC_Os06g02990NANA6+1098388..1099181hypothetical protein
LOC_Os06g03000NANA6+1100366..1101751retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g03010NANA6+1105020..1105813hypothetical protein
LOC_Os06g03020OsAffx.27433.1.S1_at11/116+1109267..1109749hypothetical protein
LOC_Os06g03030OsAffx.27434.1.S1_at11/116+1111554..1112189expressed protein
LOC_Os06g03040OsAffx.27435.1.S1_at11/116+1115676..1116332hypothetical protein
LOC_Os06g03050OsAffx.15240.1.S1_at11/116+1124359..1126805expressed protein
LOC_Os06g03059Os.52099.1.S1_at11/116+1127840..1128809expressed protein
LOC_Os06g03070OsAffx.27437.1.S1_at11/116+1131268..1131867hypothetical protein
LOC_Os06g03080Os.50769.1.A1_at7/116+1136135..1137863expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27434.1.S1_at--371--8371Chr06:1111685..1111709 (25 bp)
GGCGATGAAATTCTCCGTCGTCCAG
LOC_Os06g03030
OsAffx.27434.1.S1_at--290--8211Chr06:1111732..1111756 (25 bp)
GGAATGGCCCCGTCGGGATGAACAT
LOC_Os06g03030
OsAffx.27434.1.S1_at--286--7991Chr06:1111747..1111771 (25 bp)
GGATGAACATGACCTTCACCATCGC
LOC_Os06g03030
OsAffx.27434.1.S1_at--507--6171Chr06:1111839..1111863 (25 bp)
GAGGATCTGACGCTGTTCACCCGGT
LOC_Os06g03030
OsAffx.27434.1.S1_at--159--5451Chr06:1111925..1111949 (25 bp)
GAACGCGACGAACATCACGGTGCCG
LOC_Os06g03030
OsAffx.27434.1.S1_at--235--10551Chr06:1111953..1111977 (25 bp)
TTCATCGGCTACAAGGACTGGGACA
LOC_Os06g03030
OsAffx.27434.1.S1_at--562--4351Chr06:1111984..1112008 (25 bp)
CCACCGGCCGTGAGCAGCTGAGCGT
LOC_Os06g03030
OsAffx.27434.1.S1_at--87--1091Chr06:1112016..1112040 (25 bp)
AGGGCCACCGTGCACTTCATAGTCG
LOC_Os06g03030
OsAffx.27434.1.S1_at--834--7651Chr06:1112041..1112065 (25 bp)
GGGTAGCCTACACAAGGGCCTTTCG
LOC_Os06g03030
OsAffx.27434.1.S1_at--1159--10151Chr06:1112119..1112143 (25 bp)
TATCATACCCTAACACTACTTGTGC
LOC_Os06g03030
OsAffx.27434.1.S1_at--574--3731Chr06:1112134..1112158 (25 bp)
CTACTTGTGCTGAAGCAGGGCTGAT
LOC_Os06g03030
Target Sequence 
GGCGATGAAATTCTCCGTCGTCCAGGTCGAGCACGCCTTCGTGGGGAGGAATGGCCCCGTCGGGATGAACATGACCTTCA
CCATCGCCGCCGCCACCCGCGGGAAGCGCGCCGGCGTCAGGTACAGCGAGGTCGCCGTCGACCTGGTGCACCAGGAGGAT
CTGACGCTGTTCACCCGGTCCTACTCGGCGGTGGCGAGGAACGCAGGCACGAAGTTGCCGTTCGAGCAGCCGCAGCCGGG
GAACGCGACGAACATCACGGTGCCGCTCTTCATCGGCTACAAGGACTGGGACAACGCCACCACCGGCCGTGAGCAGCTGA
GCGTGCAGGTGAGGGCCACCGTGCACTTCATAGTCGGGGTAGCCTACACAAGGGCCTTTCGCATCGCCGTCCTGTGCCCC
CTCAACTACTCCCTCAACACAACCGATCCCGTCGTATCATACCCTAACACTACTTGTGCTGAAGCAGGGCTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27434.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis