Browse Element(s) Details


OsAffx.27435.1.S1_at

Description tigr:9634.m00209
TID=OsAffx.27435.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0304011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g02960Os.52298.1.S1_at11/116+1089059..1091611expressed protein
LOC_Os06g02970NANA6+1092764..1093351retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g02980OsAffx.30475.9.S1_s_at11/116+1094473..1095463ATP synthase F1, epsilon subunit family protein
LOC_Os06g02980OsAffx.30475.1.S1_s_at8/116+1094473..1095463ATP synthase F1, epsilon subunit family protein
LOC_Os06g02980OsAffx.30475.5.S1_x_at4/116+1094473..1095463ATP synthase F1, epsilon subunit family protein
LOC_Os06g02990NANA6+1098388..1099181hypothetical protein
LOC_Os06g03000NANA6+1100366..1101751retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g03010NANA6+1105020..1105813hypothetical protein
LOC_Os06g03020OsAffx.27433.1.S1_at11/116+1109267..1109749hypothetical protein
LOC_Os06g03030OsAffx.27434.1.S1_at11/116+1111554..1112189expressed protein
LOC_Os06g03040OsAffx.27435.1.S1_at11/116+1115676..1116332hypothetical protein
LOC_Os06g03050OsAffx.15240.1.S1_at11/116+1124359..1126805expressed protein
LOC_Os06g03059Os.52099.1.S1_at11/116+1127840..1128809expressed protein
LOC_Os06g03070OsAffx.27437.1.S1_at11/116+1131268..1131867hypothetical protein
LOC_Os06g03080Os.50769.1.A1_at7/116+1136135..1137863expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27435.1.S1_at--494--891Chr06:1116178..1116202 (25 bp)
AGGCCGTGCTGGTGATGCGCTCCAA
LOC_Os06g03040
OsAffx.27435.1.S1_at--499--4391Chr06:1116127..1116151 (25 bp)
GCCAAGGCGCCGTCAAGGTGAAGCT
LOC_Os06g03040
OsAffx.27435.1.S1_at--444--9011Chr06:1116100..1116124 (25 bp)
TGCAACCACCGTCATGGATGAGGAT
LOC_Os06g03040
OsAffx.27435.1.S1_at--731--8871Chr06:1116082..1116106 (25 bp)
TGAGGATGAACTTCACCCTGGCCGC
LOC_Os06g03040
OsAffx.27435.1.S1_at--876--3191Chr06:1115976..1116000 (25 bp)
CAAGACCCTCATGACTGAATTCCAT
LOC_Os06g03040
OsAffx.27435.1.S1_at--349--91Chr06:1115958..1115982 (25 bp)
ATTCCATGTGGATCGCGGCAATGTC
LOC_Os06g03040
OsAffx.27435.1.S1_at--450--491Chr06:1115903..1115927 (25 bp)
ATCTGGTTGCAGGACGCGAGCGACA
LOC_Os06g03040
OsAffx.27435.1.S1_at--872--2531Chr06:1115833..1115857 (25 bp)
AACTGAAGGTCCGTGGCGACACCGA
LOC_Os06g03040
OsAffx.27435.1.S1_at--237--6651Chr06:1115793..1115817 (25 bp)
GTTGAACGAGGACGCCTTCGATCCA
LOC_Os06g03040
OsAffx.27435.1.S1_at--425--8251Chr06:1115761..1115785 (25 bp)
GGCACGTCGTATTCGATTGCGCTGG
LOC_Os06g03040
OsAffx.27435.1.S1_at--592--9311Chr06:1115732..1115756 (25 bp)
TCCCTGACCGTAGTCGACGATTTGA
LOC_Os06g03040
Target Sequence 
AGGCCGTGCTGGTGATGCGCTCCAACCAGTACGACCTCGAGCTGAAGGTCCGCCAAGGCGCCGTCAAGGTGAAGCTCCTG
CAACCACCGTCATGGATGAGGATGAACTTCACCCTGGCCGCCACCAACCCGATCACCAACACGGCCGCAACGGACGTCAA
CATCTCCCTCTCCGTCACCGACATCACCGTCACCAGCGGCAACAAGACCCTCATGACTGAATTCCATGTGGATCGCGGCA
ATGTCTCTGTCGGGCCGGGGCACACCGAATATGTGATCTGGTTGCAGGACGCGAGCGACAGCTCCTTCTTCGATCAGCTC
GAAAACAATCGGAAAGTCACGATCGAACTGAAGGTCCGTGGCGACACCGACACGCGGATTACCCCGTTGAACGAGGACGC
CTTCGATCCACCCTCCCGGCACGTCGTATTCGATTGCGCTGGCGTCTCCCTGACCGTAGTCGACGATTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27435.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis