Browse Element(s) Details


Os.52298.1.S1_at

Description gb:AK066196.1
DB_XREF= gi:32976214
TID=Os.52298.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52298 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013050O22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013050O22, full insert sequence.
FL= gb:AK066196.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0296011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g02900Os.14214.1.S1_at11/116+1062537..1065533Eukaryotic aspartyl protease family protein, expressed
LOC_Os06g02910NANA6+1070114..1070593retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g02920NANA6+1073319..1074518retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g02930OsAffx.15239.1.S1_at11/116+1077073..1078054expressed protein
LOC_Os06g02930Os.7163.1.S1_at11/116+1077073..1078054expressed protein
LOC_Os06g02940Os.20086.1.S1_at11/116+1078930..1079932expressed protein
LOC_Os06g02949NANA6+1087381..1088185NA
LOC_Os06g02960Os.52298.1.S1_at11/116+1089059..1091611expressed protein
LOC_Os06g02970NANA6+1092764..1093351retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g02980OsAffx.30475.9.S1_s_at11/116+1094473..1095463ATP synthase F1, epsilon subunit family protein
LOC_Os06g02980OsAffx.30475.1.S1_s_at8/116+1094473..1095463ATP synthase F1, epsilon subunit family protein
LOC_Os06g02980OsAffx.30475.5.S1_x_at4/116+1094473..1095463ATP synthase F1, epsilon subunit family protein
LOC_Os06g02990NANA6+1098388..1099181hypothetical protein
LOC_Os06g03000NANA6+1100366..1101751retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g03010NANA6+1105020..1105813hypothetical protein
LOC_Os06g03020OsAffx.27433.1.S1_at11/116+1109267..1109749hypothetical protein
LOC_Os06g03030OsAffx.27434.1.S1_at11/116+1111554..1112189expressed protein
LOC_Os06g03040OsAffx.27435.1.S1_at11/116+1115676..1116332hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52298.1.S1_at--938--6651Chr06:1091214..1091238 (25 bp)
GTTGAGCTCGTCGTGTACGTGTCGC
LOC_Os06g02960
Os.52298.1.S1_at--111--8091Chr06:1091392..1091416 (25 bp)
GGAGCTCGCTTGCATTGCGCGCATT
LOC_Os06g02960
Os.52298.1.S1_at--969--4571Chr06:1091410..1091434 (25 bp)
GCGCATTGGCGCGAACACCAAGTAA
LOC_Os06g02960
Os.52298.1.S1_at--259--3011Chr06:1091437..1091461 (25 bp)
AATGCGGTGTACTCGGATGCTTACG
LOC_Os06g02960
Os.52298.1.S1_at--767--10471Chr06:1091457..1091481 (25 bp)
TTACGTCTACGTGTGCCCTGTGGTT
LOC_Os06g02960
Os.52298.1.S1_at--962--3991Chr06:1091466..1091490 (25 bp)
CGTGTGCCCTGTGGTTTGGACGACA
LOC_Os06g02960
Os.52298.1.S1_at--312--8432Chr10:16167767..16167799 (25 bp)
GGCCATGTCTTGTTCGGTTTAATTT
NONE
Os.52298.1.S1_at--1098--6711Chr06:1091512..1091536 (25 bp)
GTTCGGTTTAATTTCCATCTCATGT
LOC_Os06g02960
Os.52298.1.S1_at--824--3551Chr06:1091527..1091551 (25 bp)
CATCTCATGTGGAATCTCTCTTTGT
LOC_Os06g02960
Os.52298.1.S1_at--958--451Chr06:1091540..1091564 (25 bp)
ATCTCTCTTTGTTATTTGTGCTCTA
LOC_Os06g02960
Os.52298.1.S1_at--147--8691Chr06:1091556..1091580 (25 bp)
TGTGCTCTATTATATTTCCTTTTGC
LOC_Os06g02960
Target Sequence 
GTTGAGCTCGTCGTGTACGTGTCGCCGTCGCGCGCGGAGGAGCACGCCAGGGGGCACGAGGCGGCGCTGGCGCAGGGCAG
CGAACTCGTGACGCTGCTCTGGGTGCTCGCCACGCACACCGGCATCGCCCGCCCGGACCACGACGGCGAAATCGACCAGC
CGGCGGCGCCGGCATAGCGGAGCTCGCTTGCATTGCGCGCATTGGCGCGAACACCAAGTAATTAATGCGGTGTACTCGGA
TGCTTACGTCTACGTGTGCCCTGTGGTTTGGACGACATTGCTTTCCCGGCCATGTCTTGTTCGGTTTAATTTCCATCTCA
TGTGGAATCTCTCTTTGTTATTTGTGCTCTATTATATTTCCTTTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52298.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis