Browse Element(s) Details


Os.52099.1.S1_at

Description gb:AK064715.1
DB_XREF= gi:32974733
TID=Os.52099.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52099 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-118-D11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-118-D11, full insert sequence.
FL= gb:AK064715.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0305911/11expressed protein
LOC_Os06g030997/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g03010NANA6+1105020..1105813hypothetical protein
LOC_Os06g03020OsAffx.27433.1.S1_at11/116+1109267..1109749hypothetical protein
LOC_Os06g03030OsAffx.27434.1.S1_at11/116+1111554..1112189expressed protein
LOC_Os06g03040OsAffx.27435.1.S1_at11/116+1115676..1116332hypothetical protein
LOC_Os06g03050OsAffx.15240.1.S1_at11/116+1124359..1126805expressed protein
LOC_Os06g03059Os.52099.1.S1_at11/116+1127840..1128809expressed protein
LOC_Os06g03070OsAffx.27437.1.S1_at11/116+1131268..1131867hypothetical protein
LOC_Os06g03080Os.50769.1.A1_at7/116+1136135..1137863expressed protein
LOC_Os06g03090NANA6+1141381..1142186hypothetical protein
LOC_Os06g03099Os.52099.1.S1_at7/116+1142888..1143568hypothetical protein
LOC_Os06g03110OsAffx.27437.1.S1_at10/116+1144639..1145184hypothetical protein
LOC_Os06g03120Os.50769.1.A1_at5/116+1152607..1154129Aspartic proteinase nepenthesin-2 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52099.1.S1_at--980--952Chr06:1143114..1143138 (25 bp)
AGGACGTGCCTCTCCGGTACGTGAA
LOC_Os06g03099
Os.52099.1.S1_at--29--9292Chr06:1143102..1143126 (25 bp)
TCCGGTACGTGAAGGCGCTGTTCGA
LOC_Os06g03099
Os.52099.1.S1_at--781--3552Chr06:1143068..1143092 (25 bp)
CATCAGCGCGGCGATACAGGTGGAC
LOC_Os06g03099
Os.52099.1.S1_at--555--9672Chr06:1143036..1143060 (25 bp)
TCACCACCCGCATGGAGATCGACGG
LOC_Os06g03099
Os.52099.1.S1_at--260--5792Chr06:1142935..1142959 (25 bp)
GACGACGATGAGTCCCGTACCAGGG
LOC_Os06g03099
Os.52099.1.S1_at--250--2172Chr06:1142910..1142934 (25 bp)
ACACGTGGTGCCTAGACAAGTCTGA
LOC_Os06g03099
Os.52099.1.S1_at--136--2232Chr06:1142895..1142919 (25 bp)
ACAAGTCTGACGTACCAGCTTTCGT
LOC_Os06g03099
Os.52099.1.S1_at--140--1712Chr06:1142882..1142906 (25 bp)
ACCAGCTTTCGTTGGATAGACCGAC
NONE
Os.52099.1.S1_at--243--8572Chr06:1142870..1142894 (25 bp)
TGGATAGACCGACGGATCTACTCCC
NONE
Os.52099.1.S1_at--974--1192Chr06:1142776..1142800 (25 bp)
AGTATGCTCAGATTCTTCTATTAGA
NONE
Os.52099.1.S1_at--122--732Chr06:1142749..1142773 (25 bp)
ATGTTCCATCCAATACCAGGTTGAG
NONE
Target Sequence 
AGGACGTGCCTCTCCGGTACGTGAAGGCGCTGTTCGACGGCCGTGGCATCAGCGCGGCGATACAGGTGGACGGCTTCCTC
ACCACCCGCATGGAGATCGACGGGAGGATCAGCAGGAGCAACGGCGGCGTCGCCACCACGTTCTACTGCCTGCCGGTGAC
CATCGCCGTCGGCGACGGCGACGACGATGAGTCCCGTACCAGGGACACGTGGTGCCTAGACAAGTCTGACGTACCAGCTT
TCGTTGGATAGACCGACGGATCTACTCCCTCCGTCAAAAAAAAAAATCTAATCTAATATTAGATGTGATGTTTTCTATAA
CAACAAATTTGGATAGAAGTATGCTCAGATTCTTCTATTAGAAAATGTTCCATCCAATACCAGGTTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52099.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis