Browse Element(s) Details


OsAffx.15240.1.S1_at

Description tigr:9634.m00210
TID=OsAffx.15240.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0305011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g03000NANA6+1100366..1101751retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g03010NANA6+1105020..1105813hypothetical protein
LOC_Os06g03020OsAffx.27433.1.S1_at11/116+1109267..1109749hypothetical protein
LOC_Os06g03030OsAffx.27434.1.S1_at11/116+1111554..1112189expressed protein
LOC_Os06g03040OsAffx.27435.1.S1_at11/116+1115676..1116332hypothetical protein
LOC_Os06g03050OsAffx.15240.1.S1_at11/116+1124359..1126805expressed protein
LOC_Os06g03059Os.52099.1.S1_at11/116+1127840..1128809expressed protein
LOC_Os06g03070OsAffx.27437.1.S1_at11/116+1131268..1131867hypothetical protein
LOC_Os06g03080Os.50769.1.A1_at7/116+1136135..1137863expressed protein
LOC_Os06g03090NANA6+1141381..1142186hypothetical protein
LOC_Os06g03099Os.52099.1.S1_at7/116+1142888..1143568hypothetical protein
LOC_Os06g03110OsAffx.27437.1.S1_at10/116+1144639..1145184hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15240.1.S1_at--418--4111Chr06:1126213..1126237 (25 bp)
CGCACCCCACGGAGCATGTGGCGGA
LOC_Os06g03050
OsAffx.15240.1.S1_at--1150--5891Chr06:1126308..1126332 (25 bp)
GAGCTCCTGCCGGACAACAAGGAAG
LOC_Os06g03050
OsAffx.15240.1.S1_at--75--2451Chr06:1126323..1126347 (25 bp)
AACAAGGAAGGCACGCAGCTCGTCT
LOC_Os06g03050
OsAffx.15240.1.S1_at--469--9931Chr06:1126347..1126371 (25 bp)
TACGGCGACGTGATGAACGAGCAGA
LOC_Os06g03050
OsAffx.15240.1.S1_at--499--1511Chr06:1126366..1126390 (25 bp)
AGCAGATGAAGGTGGCGGTCGGCGC
LOC_Os06g03050
OsAffx.15240.1.S1_at--250--3491Chr06:1126463..1126487 (25 bp)
CAGGCTGACGGCGACGGAGATCCAC
LOC_Os06g03050
OsAffx.15240.1.S1_at--722--4091Chr06:1126474..1126498 (25 bp)
CGACGGAGATCCACCGTGACAGCAG
LOC_Os06g03050
OsAffx.15240.1.S1_at--669--4691Chr06:1126503..1126527 (25 bp)
GCGGCGTACGCGAGCCTGACGGTGC
LOC_Os06g03050
OsAffx.15240.1.S1_at--996--5852Chr06:1126514..1126538 (25 bp)
GAGCCTGACGGTGCTGGAGAAGGGC
LOC_Os06g03050
OsAffx.15240.1.S1_at--52--2111Chr06:1126654..1126678 (25 bp)
ACATGGCGCCGTCGAGCGTGGAGGA
LOC_Os06g03050
OsAffx.15240.1.S1_at--1007--3892Chr06:1126704..1126728 (25 bp)
CTGGTGAAGGGCATCGAGGTCATCA
LOC_Os06g03050
Target Sequence 
CGCACCCCACGGAGCATGTGGCGGAGGAGCGGCGGAGCCGGAAGACGGCGGCGAGGCTGTCCAGGTACTGCGCCTACCTC
GTCGCCTTCCAGCCGGAGCTCCTGCCGGACAACAAGGAAGGCACGCAGCTCGTCTACGGCGACGTGATGAACGAGCAGAT
GAAGGTGGCGGTCGGCGCCGGACAGCTCGGCTACCACGTCTACCTGACGTCGGAGTGGGGCCGGCTCGACGCGGTGCGCA
AGATCGCCGACAGGCTGACGGCGACGGAGATCCACCGTGACAGCAGCGCGGCGGCGTACGCGAGCCTGACGGTGCTGGAG
AAGGGCGCCGTGCTGGGGAAGTTGCTGGTGGAGGAAGCCGACGGCGACGACAAGGCGGCCGCGGGGGGGCGCGCCGCCGT
GTGGGAGATGGTGGCGGGCGTGTGGGTGGAGCTCGTCGCGTACATGGCGCCGTCGAGCGTGGAGGAGCACGCGAGGGCGC
ACGAGGCGGGGCTGGTGAAGGGCATCGAGGTCATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15240.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis