Browse Element(s) Details


Os.50774.1.S1_at

Description gb:AK103308.1
DB_XREF= gi:32988517
TID=Os.50774.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.50774 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033125F08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033125F08, full insert sequence.
FL= gb:AK103308.1 gb:AK058474.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1917011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g19130OsAffx.2679.1.S1_at11/112+11153618..11156239XS domain containing protein, expressed
LOC_Os02g19140Os.18886.1.S1_at11/112+11157043..11161165Ubiquitin ligase SINAT3, putative, expressed
LOC_Os02g19150Os.11998.1.S1_at10/112+11162561..11171490ATP-dependent Clp protease ATP-binding subunit clpX, putative, expressed
LOC_Os02g19150OsAffx.21705.1.S1_x_at1/112+11162561..11171490ATP-dependent Clp protease ATP-binding subunit clpX, putative, expressed
LOC_Os02g19160OsAffx.24321.1.S1_at11/112+11175847..11176164hypothetical protein
LOC_Os02g19170Os.50774.1.S1_at11/112+11180100..11182660expressed protein
LOC_Os02g19180OsAffx.2680.1.S1_at10/112+11182943..11184386Zinc finger, C2H2 type family protein
LOC_Os02g19200Os.27049.1.S2_at11/112+11188427..11193872F-box domain containing protein, expressed
LOC_Os02g19200Os.27049.1.S1_at11/112+11188427..11193872F-box domain containing protein, expressed
LOC_Os02g19210Os.17401.1.S1_at11/112+11199423..11205673WD-repeat protein 26, putative, expressed
LOC_Os02g19210Os.2427.1.S1_at1/112+11199423..11205673WD-repeat protein 26, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50774.1.S1_at--404--5951Chr02:11182083..11182107 (25 bp)
GAGAATTCGTCAGCATAATCAAGAT
LOC_Os02g19170
Os.50774.1.S1_at--85--751Chr02:11182106..11182130 (25 bp)
ATGTTTTGCGGGAAGCGGCTCTTGC
LOC_Os02g19170
Os.50774.1.S1_at--1071--4571Chr02:11182140..11182164 (25 bp)
GCGCTCAGCGGCAGACTATGACCTC
LOC_Os02g19170
Os.50774.1.S1_at--397--6211Chr02:11182269..11182293 (25 bp)
GAGGCTTCTGAATGCTCGAGCTAGG
LOC_Os02g19170
Os.50774.1.S1_at--347--631Chr02:11182280..11182304 (25 bp)
ATGCTCGAGCTAGGGATGCGACAAT
LOC_Os02g19170
Os.50774.1.S1_at--788--5911Chr02:11182332..11182356 (25 bp)
GAGCTACAGAGAAGCATTCCCAAAT
LOC_Os02g19170
Os.50774.1.S1_at--578--9151Chr02:11182438..11182462 (25 bp)
TGCGCAGTTTTCAGTTAACCACATG
LOC_Os02g19170
Os.50774.1.S1_at--799--3511Chr02:11182459..11182483 (25 bp)
CATGTCTTCTTGAGTTGCCCAGATA
LOC_Os02g19170
Os.50774.1.S1_at--838--4991Chr02:11182565..11182589 (25 bp)
GCATGTTCATTTTCCCTTTGTAAAC
LOC_Os02g19170
Os.50774.1.S1_at--350--10191Chr02:11182593..11182617 (25 bp)
TATATGTACCACTCCATACTTGCTG
LOC_Os02g19170
Os.50774.1.S1_at--864--2031Chr02:11182626..11182650 (25 bp)
ACTATATACGCTGAGGCTGCAGTTC
LOC_Os02g19170
Target Sequence 
GAGAATTCGTCAGCATAATCAAGATGTTTTGCGGGAAGCGGCTCTTGCTTCAACCTCGCGCTCAGCGGCAGACTATGACC
TCCCTTCGCCAGCAGTGTCTCGACGGGGACGCCGAGGTAAGACAAAGGGACCAACACTGGCATCGATGCTGAAGAAGAAA
GTTACTTCCAAAGATAGAATTGCAGAGAGGCTTCTGAATGCTCGAGCTAGGGATGCGACAATAAGAGAAGTTTCACATAC
TGAAGATATGAGCTACAGAGAAGCATTCCCAAATCAATGGTAGTATAAGAAGCCTAATTTTTGCTGAATAGGTTGGTGAA
TCGTCATGATAAGAGTGAATCAATAATTCTTTCTNTGCGCAGTTTTCAGTTAACCACATGTCTTCTTGAGTTGCCCAGAT
ACAAGTAAAATTGTAGGTTTTCNTTGTGAAGTTTAGTTTTTGTACAGTACAGTAGATTGAATAAGTTTCTTTTATTTCTT
TTGCATGTTCATTTTCCCTTTGTAAACATGTATATGTACCACTCCATACTTGCTGGATTAATAACTATATACGCTGAGGC
TGCAGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50774.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis