Browse Element(s) Details


Os.50780.1.S1_at

Description gb:AK058528.1
DB_XREF= gi:32968546
TID=Os.50780.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50780 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-017-A04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-017-A04, full insert sequence.
FL= gb:AK058528.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1513011/11hydrolase, alpha/beta fold family protein, expressed
LOC_Os06g515501/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g15100NANA1+8468176..8468442hypothetical protein
LOC_Os01g15110Os.15140.1.S1_at11/111+8472306..8476307Syntaxin 23, putative, expressed
LOC_Os01g15110OsAffx.26720.1.S1_at1/111+8472306..8476307Syntaxin 23, putative, expressed
LOC_Os01g15120Os.12708.1.S1_at11/111+8483322..8486420hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g15130Os.50780.1.S1_at11/111+8487384..8489147hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g15139OsAffx.22222.1.S1_x_at11/111+8489757..8490557hypothetical protein
LOC_Os01g15150OsAffx.11062.1.S1_at11/111+8493282..8493653hypothetical protein
LOC_Os01g15150OsAffx.22005.1.S1_x_at1/111+8493282..8493653hypothetical protein
LOC_Os01g15170Os.33.1.S1_at11/111+8501837..8502487hypothetical protein
LOC_Os01g15180OsAffx.22722.1.S1_x_at1/111+8506180..8511940retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g15190OsAffx.20440.2.S1_x_at11/111+8512301..8515211retrotransposon protein, putative, unclassified
LOC_Os01g15190OsAffx.20440.2.S1_at11/111+8512301..8515211retrotransposon protein, putative, unclassified
LOC_Os01g15190OsAffx.20440.1.S1_x_at1/111+8512301..8515211retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0004301molecular_functionepoxide hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50780.1.S1_at--63--4811Chr01:8488496..8488520 (25 bp)
GCTCGACTCGATTTAAACCATCTGT
LOC_Os01g15130
Os.50780.1.S1_at--602--4591Chr01:8488540..8488564 (25 bp)
GCGCAAACCGGCAACTATTATTCTA
LOC_Os01g15130
Os.50780.1.S1_at--478--9531Chr01:8488561..8488585 (25 bp)
TCTACCCCAGGACAAGACATTCTTT
LOC_Os01g15130
Os.50780.1.S1_at--567--1412Chr06:31234770..31235242 (25 bp)
AGACATTTCCTACTACGCTGACAAA
LOC_Os06g51550
Os.50780.1.S1_at--762--7571Chr01:8488819..8488843 (25 bp)
GGGCTCTGATAAATGTTCCGATAAA
LOC_Os01g15130
Os.50780.1.S1_at--65--2451Chr01:8488841..8488865 (25 bp)
AAAATTCATCGTCGGTGACCTGGAT
LOC_Os01g15130
Os.50780.1.S1_at--348--7971Chr01:8488862..8488886 (25 bp)
GGATCTCACATACAACACACCAGGT
LOC_Os01g15130
Os.50780.1.S1_at--154--7731Chr01:8488908..8488932 (25 bp)
GGTGGATTCAAAGCCAATGTGCCGA
LOC_Os01g15130
Os.50780.1.S1_at--743--7251Chr01:8488950..8488974 (25 bp)
GTCCTGGAGGGAGTTGGCCACTTCA
LOC_Os01g15130
Os.50780.1.S1_at--990--471Chr01:8489048..8489072 (25 bp)
ATCTGGTGGAGTCTAGTACATGTCT
LOC_Os01g15130
Os.50780.1.S1_at--469--2251Chr01:8489122..8489146 (25 bp)
AAATATCATGGCCACTTTTTTACAG
LOC_Os01g15130
Target Sequence 
GCTCGACTCGATTTAAACCATCTGTTTAAAATGGTGTTTGGAATGCGCAAACCGGCAACTATTATTCTACCCCAGGACAA
GACATTCTTTGATGCAATTGATTCAGATGGTACTTGCCCTCCATGGCTATCAGAGGAAGACATTTCCTACTACGCTGACA
AATTCGGCAAAACAGGGTTCACAGGAGGATTCAACTACTACAGATGCATTGACCTGGATTGGGAGCTGACTGCACCATGG
ACTGGGGCTCTGATAAATGTTCCGATAAAATTCATCGTCGGTGACCTGGATCTCACATACAACACACCAGGTGTGAAGGA
TTACATTCACAAGGGTGGATTCAAAGCCAATGTGCCGAATCTGGAGGATGTGGTTGTCCTGGAGGGAGTTGGCCACTTCA
TCAACCAGGAGAAGCCTGATGAGGTTTCTGAACACATCTGTGAGTTCTTTAGCAAGTTTCTGATGTAAACGAAATCTGGT
GGAGTCTAGTACATGTCTGTATGTCGACTACAGACATGAATTCCACGGTACTAAAAATCTCCAAATAAAATATCATGGCC
ACTTTTTTACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50780.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis