Browse Element(s) Details


Os.50818.1.S1_at

Description gb:AK058761.1
DB_XREF= gi:32968779
TID=Os.50818.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50818 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-001-B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-001-B11, full insert sequence.
FL= gb:AK058761.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3419011/11Stromal cell-derived factor 2-like protein precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g34160NANA8+21278310..21283308CAF1 family ribonuclease containing protein, expressed
LOC_Os08g34170Os.8198.1.S1_at11/118+21285907..21288251CAF1 family ribonuclease containing protein, expressed
LOC_Os08g34170Os.8198.1.S2_at11/118+21285907..21288251CAF1 family ribonuclease containing protein, expressed
LOC_Os08g34180OsAffx.17325.1.S1_at11/118+21292005..21296827hypothetical protein
LOC_Os08g34190Os.50818.1.S1_at11/118+21300756..21303893Stromal cell-derived factor 2-like protein precursor, putative, expressed
LOC_Os08g34190OsAffx.2825.1.S1_x_at1/118+21300756..21303893Stromal cell-derived factor 2-like protein precursor, putative, expressed
LOC_Os08g34200NANA8+21306118..21307050hypothetical protein
LOC_Os08g34210Os.17959.1.S1_a_at11/118+21312945..21317964NADP-dependent glyceraldehyde-3-phosphate dehydrogenase, putative, expressed
LOC_Os08g34220Os.10424.1.S1_at11/118+21318122..21320859Omega-6 fatty acid desaturase, chloroplast precursor, putative, expressed
LOC_Os08g34230OsAffx.22759.1.S1_at5/118+21324165..21326573retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50818.1.S1_at--1143--3311Chr08:21302606..21302630 (25 bp)
CACCATTATCCGGTAACCTAGAGGT
LOC_Os08g34190
Os.50818.1.S1_at--588--5571Chr08:21301650..21301674 (25 bp)
GAAAGTAAGACTCCGACATGTTGAT
LOC_Os08g34190
Os.50818.1.S1_at--438--4231Chr08:21301638..21301662 (25 bp)
CCGACATGTTGATACTGGAGGTTAT
LOC_Os08g34190
Os.50818.1.S1_at--229--8031Chr08:21301622..21301646 (25 bp)
GGAGGTTATCTGCACAGTCACAACA
LOC_Os08g34190
Os.50818.1.S1_at--632--6611Chr08:21301090..21301114 (25 bp)
GTTGGCAACAGAGGGCGTCTACCTT
LOC_Os08g34190
Os.50818.1.S1_at--721--4651Chr08:21301025..21301049 (25 bp)
GCGTCCAAGGTTAACATAGCACCAG
LOC_Os08g34190
Os.50818.1.S1_at--3--9831Chr08:21300948..21300972 (25 bp)
TAAACCCTGAGTCCCGAGTATTTTG
LOC_Os08g34190
Os.50818.1.S1_at--942--7231Chr08:21300938..21300962 (25 bp)
GTCCCGAGTATTTTGTTGGTTATAG
LOC_Os08g34190
Os.50818.1.S1_at--195--1951Chr08:21300885..21300909 (25 bp)
ACAAACGTTTCATGTAGCCAATTTA
LOC_Os08g34190
Os.50818.1.S1_at--161--6891Chr08:21300822..21300846 (25 bp)
GTATTTGCTCTTCATGCTGACGCTA
LOC_Os08g34190
Os.50818.1.S1_at--1012--8931Chr08:21300805..21300829 (25 bp)
TGACGCTAGCAAGCACACCTATCAA
LOC_Os08g34190
Target Sequence 
CACCATTATCCGGTAACCTAGAGGTTAGCTGTTTTGGTGGGGATGGACAATCAGATACTGGAGATTATTGGAGGCTGGAG
ATTGAGGGAGGTGGAAAGCTATGGAAACAGGATCAGAAAGTAAGACTCCGACATGTTGATACTGGAGGTTATCTGCACAG
TCACAACAAGAAGTACAACAGGCTTGGTGGTGGGCAGCAAGAGGTATGTGGCNTTAGAGAGAAGNGAGCTNAAAATATTT
GGTTGGCAACAGAGGGCGTCTACCTTCCCGTTAACAAAAGCAAGTNAACTCAACATTCCCATGGNTGCGTCCAAGGTTAA
CATAGCACCAGAATTTTACTGACATTTTGTTCTGCTAATGCTTTTAAATTTAAAGAAGGGACCTAAACCCTGAGTCCCGA
GTATTTTGTTGGTTATAGATGACGATGTGCAGAAAATGAGAAATATACAAACGTTTCATGTAGCCAATTTACTTTCTAAT
ATTCAGAACGACAAGCTGTTGTATAATTTGTATTTGCTCTTCATGCTGACGCTAGCAAGCACACCTATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50818.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis