Browse Element(s) Details


Os.17959.1.S1_a_at

Description gb:AF357884.1
DB_XREF= gi:19880026
TID=Os.17959.1
CNT=56
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.17959 (NCBI UniGene Cluster)
DEF=Oryza sativa glyceraldehyde-3-phosphate dehydrogenase mRNA, complete cds.
PROD=glyceraldehyde-3-phosphate dehydrogenase
FL= gb:AK062559.1 gb:AF357884.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3421011/11NADP-dependent glyceraldehyde-3-phosphate dehydrogenase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g34170Os.8198.1.S1_at11/118+21285907..21288251CAF1 family ribonuclease containing protein, expressed
LOC_Os08g34170Os.8198.1.S2_at11/118+21285907..21288251CAF1 family ribonuclease containing protein, expressed
LOC_Os08g34180OsAffx.17325.1.S1_at11/118+21292005..21296827hypothetical protein
LOC_Os08g34190Os.50818.1.S1_at11/118+21300756..21303893Stromal cell-derived factor 2-like protein precursor, putative, expressed
LOC_Os08g34190OsAffx.2825.1.S1_x_at1/118+21300756..21303893Stromal cell-derived factor 2-like protein precursor, putative, expressed
LOC_Os08g34200NANA8+21306118..21307050hypothetical protein
LOC_Os08g34210Os.17959.1.S1_a_at11/118+21312945..21317964NADP-dependent glyceraldehyde-3-phosphate dehydrogenase, putative, expressed
LOC_Os08g34220Os.10424.1.S1_at11/118+21318122..21320859Omega-6 fatty acid desaturase, chloroplast precursor, putative, expressed
LOC_Os08g34230OsAffx.22759.1.S1_at5/118+21324165..21326573retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g34240Os.55509.1.S1_at11/118+21333909..21335751Protein kinase domain containing protein, expressed
LOC_Os08g34249OsAffx.29504.1.S1_at11/118+21341722..21342035inhibitor I family protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009450biological_processgamma-aminobutyric acid catabolism
GO:0005739cellular_componentmitochondrion
GO:0005759cellular_componentmitochondrial matrix
GO:0004028molecular_function3-chloroallyl aldehyde dehydrogenase activity
GO:0004777molecular_functionsuccinate-semialdehyde dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17959.1.S1_a_at--137--8071Chr08:21317157..21317181 (25 bp)
GGAGCAACCTTTTGTCAGGAGTACA
LOC_Os08g34210
Os.17959.1.S1_a_at--799--5931Chr08:21317185..21317209 (25 bp)
GAGAAGGCAACCTTATCTGGCCGTT
LOC_Os08g34210
Os.17959.1.S1_a_at--76--10151Chr08:21317198..21317222 (25 bp)
TATCTGGCCGTTGCTACTGGATCAC
LOC_Os08g34210
Os.17959.1.S1_a_at--858--7251Chr08:21317223..21317247 (25 bp)
GTCCGGCCTGACATGAGGATTGCTT
LOC_Os08g34210
Os.17959.1.S1_a_at--1148--9051Chr08:21317243..21317267 (25 bp)
TGCTTGGGAGGAGCCATTTGGCCCT
LOC_Os08g34210
Os.17959.1.S1_a_at--408--8831Chr08:21317278..21317302 (25 bp)
TGATTAGGATCAACTCGGTCGAGGA
LOC_Os08g34210
Os.17959.1.S1_a_at--43--7591Chr08:21317334..21317455 (25 bp)
GGGCTGCAGGGATGTGTATTCACTA
LOC_Os08g34210
Os.17959.1.S1_a_at--1010--5991Chr08:21317494..21317518 (25 bp)
GAGACCGGAACCGTTCAGATCAACT
LOC_Os08g34210
Os.17959.1.S1_a_at--717--1271Chr08:21317510..21317534 (25 bp)
AGATCAACTCTGCACCGGCTCGAGG
LOC_Os08g34210
Os.17959.1.S1_a_at--1095--1551Chr08:21317849..21317873 (25 bp)
AGCTTTGTACGCTATTTGCACCACA
LOC_Os08g34210
Os.17959.1.S1_a_at--646--9311Chr08:21317878..21317902 (25 bp)
TCCCTGTATGTTGTTGGCTCTTTTA
LOC_Os08g34210
Target Sequence 
GGAGCAACCTTTTGTCAGGAGTACAGGAGAGAAGGCAACCTTATCTGGCCGTTGCTACTGGATCACGTCCGGCCTGACAT
GAGGATTGCTTGGGAGGAGCCATTTGGCCCTGTCTTGCCTGTGATTAGGATCAACTCGGTCGAGGAAGGCATCCACCATT
GCAATGCCAGCAATTTTGGGCTGCAGGGATGTGTATTCACTAAAGATATCAACAAAGCGATCATGATCAGCGATGCGATG
GAGACCGGAACCGTTCAGATCAACTCTGCACCGGCTCGAGGACCTGACCATTTCCCCTTCCAGGGCTTGAAGGACAGTGG
GATTGGATCCCAGGGGATAACTAACAGCATAAACATGATGACCAAGGTGAAGAGCACTGTCATAAACCTACCATCTCCAT
CCTACACCATGGGCTGAGGTGTTCCATATAGATGATCAGATTTCTATAACCACATGAGTACAATGTAGAGAATTCAAATG
TTTTGTAACCACGTGAGCTTTGTACGCTATTTGCACCACAGTTCTCCCTGTATGTTGTTGGCTCTTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17959.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis