Browse Element(s) Details


Os.10424.1.S1_at

Description gb:AK060449.1
DB_XREF= gi:32970467
TID=Os.10424.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.10424 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-011-F10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-011-F10, full insert sequence.
FL= gb:AK060449.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3422011/11Omega-6 fatty acid desaturase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g34180OsAffx.17325.1.S1_at11/118+21292005..21296827hypothetical protein
LOC_Os08g34190Os.50818.1.S1_at11/118+21300756..21303893Stromal cell-derived factor 2-like protein precursor, putative, expressed
LOC_Os08g34190OsAffx.2825.1.S1_x_at1/118+21300756..21303893Stromal cell-derived factor 2-like protein precursor, putative, expressed
LOC_Os08g34200NANA8+21306118..21307050hypothetical protein
LOC_Os08g34210Os.17959.1.S1_a_at11/118+21312945..21317964NADP-dependent glyceraldehyde-3-phosphate dehydrogenase, putative, expressed
LOC_Os08g34220Os.10424.1.S1_at11/118+21318122..21320859Omega-6 fatty acid desaturase, chloroplast precursor, putative, expressed
LOC_Os08g34230OsAffx.22759.1.S1_at5/118+21324165..21326573retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g34240Os.55509.1.S1_at11/118+21333909..21335751Protein kinase domain containing protein, expressed
LOC_Os08g34249OsAffx.29504.1.S1_at11/118+21341722..21342035inhibitor I family protein

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Gene Ontology Classification
GO idTypeName
GO:0006633biological_processfatty acid biosynthesis
GO:0009266biological_processresponse to temperature stimulus
GO:0010205biological_processphotoinhibition
GO:0009507cellular_componentchloroplast
GO:0042389molecular_functionomega-3 fatty acid desaturase activity
GO:0045485molecular_functionomega-6 fatty acid desaturase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10424.1.S1_at--153--10411Chr08:21318797..21318821 (25 bp)
TTATAACCTTCGTGCTGCCTATGAT
LOC_Os08g34220
Os.10424.1.S1_at--627--731Chr08:21318566..21318590 (25 bp)
ATGTTCCCTTTGATGAGGTTGCGCC
LOC_Os08g34220
Os.10424.1.S1_at--700--10691Chr08:21318548..21318572 (25 bp)
TTGCGCCTGAGGAATCCCAACCAAT
LOC_Os08g34220
Os.10424.1.S1_at--834--3091Chr08:21318479..21318503 (25 bp)
AATACTGTTGGCTGGTGTTTGCATA
LOC_Os08g34220
Os.10424.1.S1_at--1016--8231Chr08:21318402..21318426 (25 bp)
GGCACATGCCCGAAATTTTGACTGC
LOC_Os08g34220
Os.10424.1.S1_at--1097--9851Chr08:21318355..21318379 (25 bp)
TACACGGCTTCAGAGCGGTTGCCAA
LOC_Os08g34220
Os.10424.1.S1_at--492--2411Chr08:21318285..21318309 (25 bp)
AAAAATAGTGCGCTTCCAAACCAAG
LOC_Os08g34220
Os.10424.1.S1_at--63--3251Chr08:21318264..21318288 (25 bp)
CAAGCGCCTTTTTCAGTTGTTCGGT
LOC_Os08g34220
Os.10424.1.S1_at--28--7331Chr08:21318183..21318207 (25 bp)
GTGCTACAGCCATTTGCTACTGATG
LOC_Os08g34220
Os.10424.1.S1_at--600--4851Chr08:21318168..21318192 (25 bp)
GCTACTGATGTACCAGCAACCATTG
LOC_Os08g34220
Os.10424.1.S1_at--821--5151Chr08:21318153..21318177 (25 bp)
GCAACCATTGGTTTGTACCTTGATT
LOC_Os08g34220
Target Sequence 
TTATAACCTTCGTGCTGCCTATGATTCCATAAAACAGAACTGGGGCAAGTACATCAATGAAGCCAGCTGGAACTGGCGCT
TGATGAAGACAATACTGACTAAATGCCATGTTTACGACAAGGATAGATACTATGTTCCCTTTGATGAGGTTGCGCCTGAG
GAATCCCAACCAATTAAATTCCTCAAGAAGGTCATGCCAGATTATGCATGATGAAATCAATACTGTTGGCTGGTGTTTGC
ATAGAGAAACAATCACAATTACTTAGTGAGTCACATCCTAAATTCTAACTAGAACGGCACATGCCCGAAATTTTGACTGC
AAATTGCTTTGTTGGATTGTGTTACACGGCTTCAGAGCGGTTGCCAAAAGTTCATTTAGAAGAAAGGCTGTCAGAAGTTA
TCCTATAAAATTTAAAAATAGTGCGCTTCCAAACCAAGCGCCTTTTTCAGTTGTTCGGTACATCAAATATGTATTGTATA
CCTTGGAGGCTTGGAATATAAATATGGGCACGCTAGTGCTACAGCCATTTGCTACTGATGTACCAGCAACCATTGGTTTG
TACCTTGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10424.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis