Browse Element(s) Details


Os.50843.1.S1_at

Description gb:AK058938.1
DB_XREF= gi:32968956
TID=Os.50843.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.50843 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-009-F08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-009-F08, full insert sequence.
FL= gb:AK058938.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4634011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g46320NANA1+26675299..26678631transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46330Os.14491.2.S1_x_at4/111+26681581..26685281transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46330Os.47463.1.S1_x_at4/111+26681581..26685281transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46340Os.41519.1.S1_at11/111+26691357..26696371expressed protein
LOC_Os01g46340Os.50843.1.S1_at11/111+26691357..26696371expressed protein
LOC_Os01g46350Os.9524.1.S1_at11/111+26695246..26700949expressed protein
LOC_Os01g46350Os.9524.1.S2_at11/111+26695246..26700949expressed protein
LOC_Os01g46360OsAffx.23686.2.S1_at11/111+26704259..26705009hypothetical protein
LOC_Os01g46360OsAffx.23686.1.S1_s_at11/111+26704259..26705009hypothetical protein
LOC_Os01g46370Os.41516.1.S1_at11/111+26710443..26713872lipase class 3 family protein, putative, expressed
LOC_Os01g46370Os.51595.1.S1_at10/111+26710443..26713872lipase class 3 family protein, putative, expressed
LOC_Os01g46370OsAffx.23684.1.S1_x_at2/111+26710443..26713872lipase class 3 family protein, putative, expressed
LOC_Os01g46370Os.7172.1.S1_at1/111+26710443..26713872lipase class 3 family protein, putative, expressed
LOC_Os01g46380Os.4767.2.S1_x_at11/111+26719024..26723138Ketol-acid reductoisomerase, chloroplast precursor, putative, expressed
LOC_Os01g46380Os.21537.1.S1_x_at3/111+26719024..26723138Ketol-acid reductoisomerase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50843.1.S1_at--754--10671Chr01:26695972..26695996 (25 bp)
TTGCCAGGGCCTGAGCACCATTTTA
LOC_Os01g46340
Os.50843.1.S1_at--129--5091Chr01:26695986..26696010 (25 bp)
GCACCATTTTACTATCCCGATGTAT
LOC_Os01g46340
Os.50843.1.S1_at--1060--3571Chr01:26696011..26696035 (25 bp)
CATATCATTTCGTCGTTACCATAGT
LOC_Os01g46340
Os.50843.1.S1_at--47--9991Chr01:26696027..26696051 (25 bp)
TACCATAGTTCGTTTGCTTTCTTGC
LOC_Os01g46340
Os.50843.1.S1_at--474--6731Chr01:26696070..26696094 (25 bp)
GTTCTCACTAGATTTATCACACCAG
LOC_Os01g46340
Os.50843.1.S1_at--279--3071Chr01:26696100..26696124 (25 bp)
AATCTATGTTCTCGTTGTCACTGTA
LOC_Os01g46340
Os.50843.1.S1_at--369--1971Chr01:26696119..26696143 (25 bp)
ACTGTAGCCGTCTTTCATTTTTGTC
LOC_Os01g46340
Os.50843.1.S1_at--479--10071Chr01:26696162..26696186 (25 bp)
TAGGGCCCTATTCCTAACCAGTATC
LOC_Os01g46340
Os.50843.1.S1_at--167--9811Chr01:26696176..26696200 (25 bp)
TAACCAGTATCTCGTCAGCTTGGCT
LOC_Os01g46340
Os.50843.1.S1_at--157--6631Chr01:26696264..26696288 (25 bp)
GTTGTCTGGAAATTCTGGTACTACC
LOC_Os01g46340
Os.50843.1.S1_at--860--7031Chr01:26696293..26696317 (25 bp)
GTAAAGGATTACTGCCAACGGTTGA
LOC_Os01g46340
Target Sequence 
TTGCCAGGGCCTGAGCACCATTTTACTATCCCGATGTATCATATCATTTCGTCGTTACCATAGTTCGTTTGCTTTCTTGC
TTGTTTCTGTTGAGAAATGTTCTCACTAGATTTATCACACCAGTGAACAATCTATGTTCTCGTTGTCACTGTAGCCGTCT
TTCATTTTTGTCCCCTCCATGTTCTCTCTCTAGGGCCCTATTCCTAACCAGTATCTCGTCAGCTTGGCTGGGTTGTGATT
AGCTTTACATAATTTTGCAGCGAAATGTATGTGTGTGGTGGTAGATAAATCTGTTGTCTGGAAATTCTGGTACTACCATA
TGTAAAGGATTACTGCCAACGGTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50843.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis