Browse Element(s) Details


Os.50847.1.S1_at

Description gb:AK071873.1
DB_XREF= gi:32981896
TID=Os.50847.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.50847 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023123H16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023123H16, full insert sequence.
FL= gb:AK058957.1 gb:AK071873.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3088410/11ethylene-responsive elongation factor EF-Ts precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g30830NANA8+18901116..18902314transposon protein, putative, unclassified, expressed
LOC_Os08g30840OsAffx.5994.1.S1_at10/118+18904105..18905604hypothetical protein
LOC_Os08g30850Os.24676.1.A1_s_at11/118+18910908..18914213YDG/SRA domain containing protein, expressed
LOC_Os08g30850OsAffx.17252.2.S1_x_at5/118+18910908..18914213YDG/SRA domain containing protein, expressed
LOC_Os08g30860OsAffx.17251.1.S1_at11/118+18916072..18916747hypothetical protein
LOC_Os08g30870OsAffx.17252.2.S1_x_at11/118+18918592..18921004YDG/SRA domain containing protein
LOC_Os08g30884Os.55348.1.S1_at11/118+18926844..18933060ethylene-responsive elongation factor EF-Ts precursor, putative, expressed
LOC_Os08g30884OsAffx.29442.1.S1_s_at11/118+18926844..18933060ethylene-responsive elongation factor EF-Ts precursor, putative, expressed
LOC_Os08g30884Os.50847.1.S1_at10/118+18926844..18933060ethylene-responsive elongation factor EF-Ts precursor, putative, expressed
LOC_Os08g30884OsAffx.29442.1.S1_at4/118+18926844..18933060ethylene-responsive elongation factor EF-Ts precursor, putative, expressed
LOC_Os08g30900Os.52835.1.S1_at10/118+18938187..18943536YDG/SRA domain containing protein, expressed
LOC_Os08g30900OsAffx.17252.2.S1_x_at1/118+18938187..18943536YDG/SRA domain containing protein, expressed
LOC_Os08g30910OsAffx.17253.1.S1_at11/118+18952663..18956655YDG/SRA domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006414biological_processtranslational elongation
GO:0005739cellular_componentmitochondrion
GO:0003746molecular_functiontranslation elongation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50847.1.S1_at--796--651Chr08:18928387..18928411 (25 bp)
ATGCACATCGTTGCGACAAAGCCGT
LOC_Os08g30884
Os.50847.1.S1_at--365--4591Chr08:18928375..18928399 (25 bp)
GCGACAAAGCCGTTGTTTTTATCAA
LOC_Os08g30884
Os.50847.1.S1_at--379--1311Chr08:18928318..18928341 (24 bp)
AGAGGGACATACTCCGGACTCAGGC
LOC_Os08g30884
Os.50847.1.S1_at--309--8131NONE
GGACTCAGGCTGAAAGCTCTGGAAA
NONE
Os.50847.1.S1_at--1160--4791Chr08:18927731..18927755 (25 bp)
GCTCTGGAAAATCCCAAATGGCCAT
LOC_Os08g30884
Os.50847.1.S1_at--640--6611Chr08:18927481..18927505 (25 bp)
GTTGGCTCAAAAGTTACAGTTGGCA
LOC_Os08g30884
Os.50847.1.S1_at--179--9931Chr08:18927065..18927089 (25 bp)
TACGGCTCGTTCTGCATAGTTTTCA
LOC_Os08g30884
Os.50847.1.S1_at--1075--6711Chr08:18927057..18927081 (25 bp)
GTTCTGCATAGTTTTCAAGCTGACA
LOC_Os08g30884
Os.50847.1.S1_at--1078--7152Chr08:15228745..15228769 (25 bp)
GTCTCCTGAGAACTGTACTACTTTT
NONE
Os.50847.1.S1_at--743--10391Chr08:18926948..18926972 (25 bp)
TTTTCCGCGGTTTGGCTCCAACAAT
LOC_Os08g30884
Os.50847.1.S1_at--301--8332Chr08:15228779..15228803 (25 bp)
GGCTCCAACAATACGGTCATATTTT
NONE
Target Sequence 
ATGCACATCGTTGCGACAAAGCCGTTGTTTTTATCAAAAGAACTGGTCTCTGCTTCAGCTGTTGAAAATGAGAGGGACAT
ACTCCGGACTCAGGCTGAAAGCTCTGGAAAATCCCAAATGGCCATGGAGAAAATGGTGGAAGGCCGACTAAGAAAGTATT
TTGAAGAAGTTGTGCTTTTGGAGCAAAAATATGTTGTCAATGACAGCACAAACATCAAGAGCGNCCTGAATGATTTGTCA
AAGGAAGTTGGCTCAAAAGTTACAGTTGGCAATTTTGCTAGGATGGAAGTTGGCGAAGGAGTTTCANAGGCCTGATGAGT
CCACTGGGTCTGAAGCTACGGCTCGTTCTGCATAGTTTTCAAGCTGACATGAATCAAATGTGATAATTGAGATATGCTGA
GGTTTCTCTTCTTCTCAAGTTAGATTTATTAGTCTCCTGAGAACTGTACTACTTTTTCCGCGGTTTGGCTCCAACAATAC
GGTCATATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50847.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis