Browse Element(s) Details


Os.50873.1.S1_x_at

Description gb:AK059131.1
DB_XREF= gi:32969149
TID=Os.50873.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50873 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-022-G08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-022-G08, full insert sequence.
FL= gb:AK059131.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3992011/11formin homology 2 domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39890OsAffx.16645.1.S1_at10/117+23920672..23922066hypothetical protein
LOC_Os07g39900Os.22462.1.S1_at10/117+23924198..23929526Interferon-related developmental regulator family protein, expressed
LOC_Os07g39910OsAffx.28831.1.S1_at11/117+23931368..23933794pentatricopeptide, putative
LOC_Os07g39920Os.50873.1.S1_x_at11/117+23942843..23948733formin homology 2 domain-containing protein, putative, expressed
LOC_Os07g39920Os.50281.1.S1_at11/117+23942843..23948733formin homology 2 domain-containing protein, putative, expressed
LOC_Os07g39930OsAffx.16646.1.S1_at11/117+23951710..23954078expressed protein
LOC_Os07g39940OsAffx.28832.1.S1_at10/117+23955321..23956573Helix-loop-helix DNA-binding domain containing protein
LOC_Os07g39950OsAffx.16647.1.S1_at9/117+23964188..23968364Mitotic checkpoint protein BUB3, putative, expressed
LOC_Os07g39960Os.55561.1.S1_at11/117+23971763..23975024Zinc finger, C2H2 type family protein

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Gene Ontology Classification
GO idTypeName
GO:0009960biological_processendosperm development
GO:0030036biological_processactin cytoskeleton organization and biogenesis
GO:0030041biological_processactin filament polymerization
GO:0045010biological_processactin nucleation
GO:0005618cellular_componentcell wall
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0005819cellular_componentspindle
GO:0009524cellular_componentphragmoplast
GO:0016020cellular_componentmembrane
GO:0003779molecular_functionactin binding
GO:0005515molecular_functionprotein binding
GO:0051015molecular_functionactin filament binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50873.1.S1_x_at--141--1631Chr07:23948010..23948034 (25 bp)
AGCGGCAACATCCTGAGGCTCGAAG
LOC_Os07g39920
Os.50873.1.S1_x_at--1156--1031Chr07:23948047..23948071 (25 bp)
AGGTGAAGCTTGTCCTACAGCTCAA
LOC_Os07g39920
Os.50873.1.S1_x_at--879--4611Chr07:23948098..23948122 (25 bp)
GCGAGAACTTCTTCCAGGCAATGGT
LOC_Os07g39920
Os.50873.1.S1_x_at--825--8211Chr07:23948114..23948138 (25 bp)
GGCAATGGTTGTCTTCCTCAGAAGA
LOC_Os07g39920
Os.50873.1.S1_x_at--830--7491Chr07:23948265..23948289 (25 bp)
GTGGTGGATGAATTCCTCCTGATAC
LOC_Os07g39920
Os.50873.1.S1_x_at--337--1931Chr07:23948288..23948312 (25 bp)
ACTGGACCGTGTTTGCAGGGACGTC
LOC_Os07g39920
Os.50873.1.S1_x_at--116--6231Chr07:23948336..23948360 (25 bp)
GATGGGCTCCGGTAAGTCGTTCCGC
LOC_Os07g39920
Os.50873.1.S1_x_at--443--5971Chr07:23948397..23948421 (25 bp)
GAGAACCGGCGAGTTCTTAGCTCCT
LOC_Os07g39920
Os.50873.1.S1_x_at--65--711Chr07:23948425..23948449 (25 bp)
ATGAGGACAGCTCGTCATCTTAGGA
LOC_Os07g39920
Os.50873.1.S1_x_at--897--6931Chr07:23948492..23948516 (25 bp)
GTAGTGATTCTTCCGGAGCTGAACA
LOC_Os07g39920
Os.50873.1.S1_x_at--34--9771Chr07:23948550..23948574 (25 bp)
TAAGGGAGTCGTCACTGTCTGTCAC
LOC_Os07g39920
Target Sequence 
AGCGGCAACATCCTGAGGCTCGAAGCCGATCTCGAGAAGGTGAAGCTTGTCCTACAGCTCAAGGAGACTTGCTCAGATCA
AGGCGCGAGCGAGAACTTCTTCCAGGCAATGGTTGTCTTCCTCAGAAGAGCAGAGGCAGAGATCAAGAACATGAAAACCG
CAGAGGAGCCTCACCCTCTGAGGATATTCGTGGTGGTGGATGAATTCCTCCTGATACTGGACCGTGTTTGCAGGGACGTC
GGCAGGACGCCGGAGAGGGTGATGATGGGCTCCGGTAAGTCGTTCCGCGTCCCTGCAGGTACCTCATTGCCGCCTCATCG
GAATGAGAACCGGCGAGTTCTTAGCTCCTCCGATGAGGACAGCTCGTCATCTTAGGAGCAAACATTTTTGGTGCATAGGT
TAGCTGATAAGATTTGAGAGTAGTGATTCTTCCGGAGCTGAACATTGTGGTGTATAGACTGTAATCACCGTCAGAAATAA
GGGAGTCGTCACTGTCTGTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50873.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis