Browse Element(s) Details


Os.50903.1.S1_at

Description gb:AK071383.1
DB_XREF= gi:32981406
TID=Os.50903.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50903 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023092E01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023092E01, full insert sequence.
FL= gb:AK071383.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0813010/11Indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g08110OsAffx.17599.1.S1_at11/119+4185360..4185842hypothetical protein
LOC_Os09g08120OsAffx.29757.2.S1_at10/119+4189886..4197627Beta-fructofuranosidase, insoluble isoenzyme 7 precursor, putative, expressed
LOC_Os09g08120OsAffx.29757.2.S1_x_at10/119+4189886..4197627Beta-fructofuranosidase, insoluble isoenzyme 7 precursor, putative, expressed
LOC_Os09g08120OsAffx.29757.3.S1_x_at8/119+4189886..4197627Beta-fructofuranosidase, insoluble isoenzyme 7 precursor, putative, expressed
LOC_Os09g08120OsAffx.29757.1.S1_x_at7/119+4189886..4197627Beta-fructofuranosidase, insoluble isoenzyme 7 precursor, putative, expressed
LOC_Os09g08120OsAffx.29757.4.S1_x_at4/119+4189886..4197627Beta-fructofuranosidase, insoluble isoenzyme 7 precursor, putative, expressed
LOC_Os09g08120OsAffx.29757.3.S1_at4/119+4189886..4197627Beta-fructofuranosidase, insoluble isoenzyme 7 precursor, putative, expressed
LOC_Os09g08130Os.50903.2.S1_at11/119+4200075..4203423Indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed
LOC_Os09g08130Os.50903.2.S1_x_at11/119+4200075..4203423Indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed
LOC_Os09g08130Os.50903.1.S1_at10/119+4200075..4203423Indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed
LOC_Os09g08140OsAffx.17600.1.S1_at11/119+4211385..4211687hypothetical protein
LOC_Os09g08150OsAffx.29759.1.S1_at11/119+4224923..4225420hypothetical protein
LOC_Os09g08160Os.15391.1.S1_at11/119+4226927..4228757expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0000162biological_processtryptophan biosynthesis
GO:0009507cellular_componentchloroplast
GO:0004425molecular_functionindole-3-glycerol-phosphate synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50903.1.S1_at--106--4731Chr09:4200370..4200831 (25 bp)
GCTGGTGTTTCTGCAATTTTGGTAG
LOC_Os09g08130
Os.50903.1.S1_at--20--10871Chr09:4200352..4200376 (25 bp)
TTGGTAGGAGAGTCCCTGGTGAAAC
LOC_Os09g08130
Os.50903.1.S1_at--642--7811Chr09:4200336..4200360 (25 bp)
TGGTGAAACAGGAAAATCCCGGGCA
LOC_Os09g08130
Os.50903.1.S1_at--1028--2251Chr09:4200323..4200347 (25 bp)
AAATCCCGGGCAAGCCATTGCTGGA
LOC_Os09g08130
Os.50903.1.S1_at--1052--2291Chr09:4200290..4200314 (25 bp)
AAAGGATCTTTTGCACTGAATAATT
LOC_Os09g08130
Os.50903.1.S1_at--281--3331Chr09:4200277..4200301 (25 bp)
CACTGAATAATTGATACGCGCGGTA
LOC_Os09g08130
Os.50903.1.S1_at--626--9951Chr09:4200263..4200287 (25 bp)
TACGCGCGGTAGTTACTGTGTGTAC
LOC_Os09g08130
Os.50903.1.S1_at--1070--1951Chr09:4200249..4200273 (25 bp)
ACTGTGTGTACCAATATGGGCTGGA
LOC_Os09g08130
Os.50903.1.S1_at--703--1171Chr09:4200214..4200238 (25 bp)
AGTAAAGCCTACAAGCCTCAAATGT
LOC_Os09g08130
Os.50903.1.S1_at--720--7551Chr09:4200177..4200201 (25 bp)
GGGCCATGCTTTCTACAAGTGTAAT
LOC_Os09g08130
Os.50903.1.S1_at--441--7431Chr04:31864916..31864959 (24 bp)
GTGTAATTTCCTTTGTTCACATTTG
NONE
Target Sequence 
GCTGGTGTTTCTGCAATTTTGGTAGGAGAGTCCCTGGTGAAACAGGAAAATCCCGGGCAAGCCATTGCTGGACTATATGG
AAAGGATCTTTTGCACTGAATAATTGATACGCGCGGTAGTTACTGTGTGTACCAATATGGGCTGGAGAAAAAAAAAAGTA
AAGCCTACAAGCCTCAAATGTAATTATGAATAAGGGCCATGCTTTCTACAAGTGTAATTTCCTTTGTTCACATTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50903.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis