Browse Element(s) Details


Os.50934.1.S1_at

Description gb:AK059565.1
DB_XREF= gi:32969583
TID=Os.50934.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50934 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-029-H07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-029-H07, full insert sequence.
FL= gb:AK059565.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2593010/11emp24/gp25L/p24 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g25900NANA3+14799965..14800786retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g25910OsAffx.3329.1.S1_at11/113+14811018..14811771hypothetical protein
LOC_Os03g25920OsAffx.13037.1.S1_x_at11/113+14815095..14817884Amino acid permease family protein
LOC_Os03g25930Os.50934.1.S1_at10/113+14822585..14826107emp24/gp25L/p24 family protein, expressed
LOC_Os03g25940Os.4789.1.S1_at11/113+14829048..14833256Cys/Met metabolism PLP-dependent enzyme family protein, expressed
LOC_Os03g25950OsAffx.13038.1.S1_at11/113+14842108..14844277hypothetical protein
LOC_Os03g25960Os.30049.1.S1_at11/113+14845419..14847519RNA recognition motif family protein, expressed
LOC_Os03g25970Os.27508.1.S1_a_at11/113+14850789..14855418KH domain-containing protein, putative, expressed
LOC_Os03g25970Os.27508.1.S2_a_at11/113+14850789..14855418KH domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006886biological_processintracellular protein transport
GO:0016020cellular_componentmembrane
GO:0008320molecular_functionprotein carrier activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50934.1.S1_at--817--7331Chr03:14825623..14825647 (25 bp)
GTGCAGTCGGGCAACTTCGCCTTCA
LOC_Os03g25930
Os.50934.1.S1_at--1114--6471Chr03:14823047..14823071 (25 bp)
GATACTATCAACTCTATCCATGAAG
LOC_Os03g25930
Os.50934.1.S1_at--652--2291NONE
AAATGTTTTATCTTCGCGCAAGGGA
NONE
Os.50934.1.S1_at--850--6231Chr03:14822874..14822898 (25 bp)
GATGGCTTGGCTTGGTTTCTTCTCA
LOC_Os03g25930
Os.50934.1.S1_at--55--10871Chr03:14822863..14822887 (25 bp)
TTGGTTTCTTCTCACTAGCTATCTG
LOC_Os03g25930
Os.50934.1.S1_at--99--10011Chr03:14822848..14822872 (25 bp)
TAGCTATCTGCCTGTCAGTGGCGGG
LOC_Os03g25930
Os.50934.1.S1_at--625--5031Chr03:14822820..14822844 (25 bp)
GCAGTTGTGGCATCTGAAGAACTTC
LOC_Os03g25930
Os.50934.1.S1_at--953--5391Chr03:14822784..14822808 (25 bp)
GAAGCTTCTATAATTCTGACTCAGA
LOC_Os03g25930
Os.50934.1.S1_at--387--6531Chr03:14822737..14822761 (25 bp)
GATTTCTCTTTTTATGCTTACCAGG
LOC_Os03g25930
Os.50934.1.S1_at--1133--891Chr03:14822715..14822739 (25 bp)
AGGCGTAAATTTCCTGCAAGGGACA
LOC_Os03g25930
Os.50934.1.S1_at--567--5491Chr03:14822672..14822696 (25 bp)
GAACATTTCTTTTCAGTTTCCTAGA
LOC_Os03g25930
Target Sequence 
GTGCAGTCGGGCAACTTCGCCTTCACGACGTCCGAGGCCGGGGACTACCTCGCCTGCTTCTGGGCGCCCGACCACCGCCC
CACCGCCACCGTCGGCTTCGAGTTCGACTGGCGCAGCGGCGTCTCCGCCAGGGACTGGACCAACGTCGCCAAGAAGGGCC
AGGTCGATATGATGGAGGTTGAGCTCAAGAAGCTGGAGGATACTATCAACTCTATCCATGAAGAAATGTTTTATCTTCGC
GCAAGGGAGGAGGAGATGCAGGAACTGAACAGGAGAACAAACTCAAGGATGGCTTGGCTTGGTTTCTTCTCACTAGCTAT
CTGCCTGTCAGTGGCGGGGTTGCAGTTGTGGCATCTGAAGAACTTCTTTGAGAGAAAGAAGCTTCTATAATTCTGACTCA
GAACATTTAGGCATAAAATTGTGTGATTTCTCTTTTTATGCTTACCAGGCGTAAATTTCCTGCAAGGGACAGATGTTAGC
ATAGTTGAGGAACATTTCTTTTCAGTTTCCTAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50934.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis