Browse Element(s) Details


Os.50947.1.S1_x_at

Description gb:AK059620.1
DB_XREF= gi:32969638
TID=Os.50947.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50947 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-030-G12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-030-G12, full insert sequence.
FL= gb:AK059620.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1131011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11250Os.51567.1.A1_at9/113+5775277..5776063expressed protein
LOC_Os03g11260Os.8108.1.S1_at11/113+5777669..5780261RING zinc finger protein, putative, expressed
LOC_Os03g11270OsAffx.10203.1.S1_x_at1/113+5781097..5782221hypothetical protein
LOC_Os03g11280NANA3+5785498..5785976hypothetical protein
LOC_Os03g11290Os.16810.1.S1_at9/113+5786983..5791825expressed protein
LOC_Os03g11300OsAffx.25053.1.S1_at11/113+5793553..5795613expressed protein
LOC_Os03g11310Os.50947.1.S1_x_at11/113+5796992..5799853expressed protein
LOC_Os03g11310Os.24634.1.A1_s_at11/113+5796992..5799853expressed protein
LOC_Os03g11310OsAffx.12824.1.S1_at11/113+5796992..5799853expressed protein
LOC_Os03g11320Os.5477.1.S2_at11/113+5802770..5807225Heparanase-like protein 2 precursor, putative, expressed
LOC_Os03g11320Os.5477.1.S1_at11/113+5802770..5807225Heparanase-like protein 2 precursor, putative, expressed
LOC_Os03g11330OsAffx.12825.1.S1_s_at11/113+5808129..5813883Glycosyl transferase family 8 protein, expressed
LOC_Os03g11340Os.12674.1.S1_s_at11/113+5819824..5823946leucine-rich repeat resistance protein, putative, expressed
LOC_Os03g11340Os.50482.1.S1_at11/113+5819824..5823946leucine-rich repeat resistance protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50947.1.S1_x_at--307--911Chr03:5797889..5797913 (25 bp)
AGGCTGTTGCCACTACTGAGGGCTA
LOC_Os03g11310
Os.50947.1.S1_x_at--1156--2071Chr03:5798104..5798128 (25 bp)
ACATTTGTCCAGTGTGGGCAGTCTG
LOC_Os03g11310
Os.50947.1.S1_x_at--325--9011Chr03:5798192..5798216 (25 bp)
TGAAGGCCATCATTGCATCATGTAC
LOC_Os03g11310
Os.50947.1.S1_x_at--568--6851Chr03:5798235..5798259 (25 bp)
GTTTGCGCTTACCACATTCAGGAGA
LOC_Os03g11310
Os.50947.1.S1_x_at--926--3051Chr03:5798307..5798331 (25 bp)
AATCAACTCACTTGGTAAGGCCGGT
LOC_Os03g11310
Os.50947.1.S1_x_at--348--4491Chr03:5798326..5798350 (25 bp)
GCCGGTGAAGATGAACTTGCCTTTA
LOC_Os03g11310
Os.50947.1.S1_x_at--330--471Chr03:5798360..5798384 (25 bp)
ATCTGCTAACATCTTCAGGCCTTAA
LOC_Os03g11310
Os.50947.1.S1_x_at--806--8431Chr03:5798377..5798401 (25 bp)
GGCCTTAAGCCTGATCAATATACAT
LOC_Os03g11310
Os.50947.1.S1_x_at--655--8031Chr03:5798402..5798426 (25 bp)
GGAGTGCTTTACTGTCAGCGTTATA
LOC_Os03g11310
Os.50947.1.S1_x_at--1041--7171Chr03:5798430..5798454 (25 bp)
GTCTGGTCGTTGTTGGGATGTCCTA
LOC_Os03g11310
Os.50947.1.S1_x_at--907--8631Chr03:5798443..5798467 (25 bp)
TGGGATGTCCTAGATCTTTTTCAAG
LOC_Os03g11310
Target Sequence 
AGGCTGTTGCCACTACTGAGGGCTACTTTGCAGCCCTGAAAATGTTTGATGAAATTGAAGAGAGCGATAAGAAGAATGTC
GATGTGATCGTTTACAACACGGTGATATCTGTGTGCGGAAGAGCAAAAGACTGGAGGCAGGTGGAGAGACTTTGGAGAAG
GCTAGGGGAGAATTCTTTGAGTGGAACCTTGATGACTTATGATTTGTTAGTTAGCACATTTGTCCAGTGTGGGCAGTCTG
AGTTAGCAGTTGATGCTTATCAGGAAATGTTCAAAAGTGGTATTGATCCAAGTGAAGATATACTGAAGGCCATCATTGCA
TCATGTACAAAAGAAGGGAAATGGGAGTTTGCGCTTACCACATTCAGGAGAATGTTGAGTGCTGGAATGAAACCTAGTAT
CATTGTGTTCAATTCCATAATCAACTCACTTGGTAAGGCCGGTGAAGATGAACTTGCCTTTAGGATGTATCATCTGCTAA
CATCTTCAGGCCTTAAGCCTGATCAATATACATGGAGTGCTTTACTGTCAGCGTTATATAGGTCTGGTCGTTGTTGGGAT
GTCCTAGATCTTTTTCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50947.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis