Browse Element(s) Details


Os.50969.1.S1_x_at

Description gb:AK059831.1
DB_XREF= gi:32969849
TID=Os.50969.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50969 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-206-A08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-206-A08, full insert sequence.
FL= gb:AK059831.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4615011/11Protease inhibitor/seed storage/LTP family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g46100Os.5503.2.S1_at11/113+26024686..26027067Cupin family protein, expressed
LOC_Os03g46100Os.5503.1.S1_at11/113+26024686..26027067Cupin family protein, expressed
LOC_Os03g46100Os.49642.1.S1_x_at7/113+26024686..26027067Cupin family protein, expressed
LOC_Os03g46110OsAffx.13376.1.S1_s_at11/113+26027787..26030746expressed protein
LOC_Os03g46120OsAffx.25572.1.S1_at11/113+26032915..26035358F-box domain containing protein
LOC_Os03g46130NANA3+26037960..26038328retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g46134OsAffx.16205.1.S1_at1/113+26043990..26046315hypothetical protein
LOC_Os03g46134Os.31535.1.A1_at1/113+26043990..26046315hypothetical protein
LOC_Os03g46140OsAffx.25573.1.S1_at11/113+26048006..26049494F-box domain containing protein
LOC_Os03g46150Os.50969.1.S1_x_at11/113+26050181..26051131Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g46150Os.50969.1.S1_at11/113+26050181..26051131Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g46150Os.50796.1.S1_at11/113+26050181..26051131Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g46170NANA3+26057015..26063594retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g46180OsAffx.13377.1.S1_at11/113+26069175..26070086Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g46190Os.53913.1.S1_at11/113+26070111..26073838RNA pol II accessory factor, Cdc73 family protein, expressed
LOC_Os03g46190OsAffx.13378.1.S1_at10/113+26070111..26073838RNA pol II accessory factor, Cdc73 family protein, expressed
LOC_Os03g46200OsAffx.25574.2.S1_x_at11/113+26074117..26074728acetyltransferase, GNAT family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0016020cellular_componentmembrane
GO:0031225cellular_componentanchored to membrane
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50969.1.S1_x_at--771--1291Chr03:26050452..26050476 (25 bp)
AGATGCGGGCCATGTTCCAGTCGCA
LOC_Os03g46150
Os.50969.1.S1_x_at--921--3491Chr03:26050786..26050810 (25 bp)
CATGGACCCGGCGATGACTGCAGGT
LOC_Os03g46150
Os.50969.1.S1_x_at--656--8551Chr03:26050813..26050837 (25 bp)
TGGATCCAAGTCAGTGCCGGGTATG
LOC_Os03g46150
Os.50969.1.S1_x_at--2--10791Chr03:26050895..26050919 (25 bp)
TTGATCTCCTCCATGCTTGCTTATG
LOC_Os03g46150
Os.50969.1.S1_x_at--276--4931Chr03:26050909..26050933 (25 bp)
GCTTGCTTATGCTTGTATGATCTGA
LOC_Os03g46150
Os.50969.1.S1_x_at--591--6411Chr03:26050927..26050951 (25 bp)
GATCTGAGATGCATGGCTGGTCTTA
LOC_Os03g46150
Os.50969.1.S1_x_at--379--7811Chr03:26050945..26050969 (25 bp)
GGTCTTATATACACACGTCCATTGT
LOC_Os03g46150
Os.50969.1.S1_x_at--709--7391Chr03:26050981..26051005 (25 bp)
GTGATGGTATATGCACATCAGCACA
LOC_Os03g46150
Os.50969.1.S1_x_at--894--5111Chr03:26051001..26051025 (25 bp)
GCACATGTGCATCGTTATTAGCTTG
LOC_Os03g46150
Os.50969.1.S1_x_at--726--10211Chr03:26051016..26051040 (25 bp)
TATTAGCTTGCTTTTCAGGTTAGAA
LOC_Os03g46150
Os.50969.1.S1_x_at--303--6071Chr03:26051047..26051071 (25 bp)
GAGTTAATATGCCATTTGCGGATGT
LOC_Os03g46150
Target Sequence 
AGATGCGGGCCATGTTCCAGTCGCAGGCGCCCTGCCTCTGCGCCGCCGTGGCGTCGGCGCCGTCCCCGCTCGCGCCGGTG
CTCGGCGGGGTGCAGTCGCTGCTCCCAACCGCCTGCAACCTGCCTCCCAATGCCTGCGCAGATGCGACAGGGTCGACGTC
GGGCTCTGCTCCGGCCGGCGGCTCGTCGGCGACGCCGTCCACGGGGGCAACTGCCGCCGCGCCGGCCATGGAGCCCGCTG
GCATGGACCCGGCGATGACTGCAGGTGGTGGATCCAAGTCAGTGCCGGGTATGCCGTACTCGGCGGCCGCCGGAGTCCAT
GGTGGTGGCGCCTCTGCTGCCGTCGCCGTCTTGATCTCCTCCATGCTTGCTTATGCTTGTATGATCTGAGATGCATGGCT
GGTCTTATATACACACGTCCATTGTGATTTGTGATCGTGATGGTATATGCACATCAGCACATGTGCATCGTTATTAGCTT
GCTTTTCAGGTTAGAAGACTTTGAGTTAATATGCCATTTGCGGATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50969.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis