Browse Element(s) Details


OsAffx.13376.1.S1_s_at

Description tigr:9631.m04471
TID=OsAffx.13376.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4611011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g46080Os.41695.5.S1_x_at10/113+26011884..26016524Transposable element protein, putative, MuDR
LOC_Os03g46080Os.41695.3.S1_x_at10/113+26011884..26016524Transposable element protein, putative, MuDR
LOC_Os03g46080Os.41695.2.S1_x_at9/113+26011884..26016524Transposable element protein, putative, MuDR
LOC_Os03g46080Os.41695.4.S1_x_at1/113+26011884..26016524Transposable element protein, putative, MuDR
LOC_Os03g46090Os.22486.1.A1_at5/113+26019165..26022817Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os03g46100Os.5503.2.S1_at11/113+26024686..26027067Cupin family protein, expressed
LOC_Os03g46100Os.5503.1.S1_at11/113+26024686..26027067Cupin family protein, expressed
LOC_Os03g46100Os.49642.1.S1_x_at7/113+26024686..26027067Cupin family protein, expressed
LOC_Os03g46110OsAffx.13376.1.S1_s_at11/113+26027787..26030746expressed protein
LOC_Os03g46120OsAffx.25572.1.S1_at11/113+26032915..26035358F-box domain containing protein
LOC_Os03g46130NANA3+26037960..26038328retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g46134OsAffx.16205.1.S1_at1/113+26043990..26046315hypothetical protein
LOC_Os03g46134Os.31535.1.A1_at1/113+26043990..26046315hypothetical protein
LOC_Os03g46140OsAffx.25573.1.S1_at11/113+26048006..26049494F-box domain containing protein
LOC_Os03g46150Os.50969.1.S1_x_at11/113+26050181..26051131Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g46150Os.50969.1.S1_at11/113+26050181..26051131Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g46150Os.50796.1.S1_at11/113+26050181..26051131Protease inhibitor/seed storage/LTP family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13376.1.S1_s_at--304--3431Chr03:26028105..26028129 (25 bp)
CAGAGCCATGATTCGTTCGCAGTAT
LOC_Os03g46110
OsAffx.13376.1.S1_s_at--1112--6871Chr03:26028084..26028108 (25 bp)
GTATTTTTCATCCTGTTCTTTTGCT
LOC_Os03g46110
OsAffx.13376.1.S1_s_at--209--6531Chr03:26028018..26028042 (25 bp)
GATTTGATCTAGTAGCGCGTTACCA
LOC_Os03g46110
OsAffx.13376.1.S1_s_at--738--4531Chr03:26028004..26028028 (25 bp)
GCGCGTTACCAAGTTTGCCTAGATT
LOC_Os03g46110
OsAffx.13376.1.S1_s_at--535--4731Chr03:26027970..26027994 (25 bp)
GCTGTGGTACTATGCTGATGTCTCT
LOC_Os03g46110
OsAffx.13376.1.S1_s_at--693--10131Chr03:26027960..26027984 (25 bp)
TATGCTGATGTCTCTTTGATCGCGT
LOC_Os03g46110
OsAffx.13376.1.S1_s_at--872--10771Chr03:26027945..26027969 (25 bp)
TTGATCGCGTCGTCTCTAGAGCGTC
LOC_Os03g46110
OsAffx.13376.1.S1_s_at--16--1371Chr03:26027928..26027952 (25 bp)
AGAGCGTCCGCCGTTTTTGATCGAT
LOC_Os03g46110
OsAffx.13376.1.S1_s_at--496--10391Chr03:26027914..26027938 (25 bp)
TTTTGATCGATCACTAGCATGGCCG
LOC_Os03g46110
OsAffx.13376.1.S1_s_at--689--1531Chr03:26027899..26027923 (25 bp)
AGCATGGCCGATGTGAGTCCAGCAT
LOC_Os03g46110
OsAffx.13376.1.S1_s_at--241--10731Chr03:26027834..26027858 (25 bp)
TTGCTTTCTATCTCCAGTAGCTGAA
LOC_Os03g46110
Target Sequence 
CAGAGCCATGATTCGTTCGCAGTATTTTTCATCCTGTTCTTTTGCTTCTCTCTCTGGCTACCCATGTATATGAGTTTGGA
AGACGATGATTTGATCTAGTAGCGCGTTACCAAGTTTGCCTAGATTCGAGTAGTAGCTGTGGTACTATGCTGATGTCTCT
TTGATCGCGTCGTCTCTAGAGCGTCCGCCGTTTTTGATCGATCACTAGCATGGCCGATGTGAGTCCAGCATGAAAAGTGG
TCGAGGAGAACATTGTTGCTAAGTTTTTTTTTTGCTTTCTATCTCCAGTAGCTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13376.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis