Browse Element(s) Details


Os.22486.1.A1_at

Description gb:AK102165.1
DB_XREF= gi:32987374
TID=Os.22486.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.22486 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033086H07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033086H07, full insert sequence.
FL= gb:AK102165.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g460905/11Endonuclease/Exonuclease/phosphatase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g46080Os.41695.5.S1_x_at10/113+26011884..26016524Transposable element protein, putative, MuDR
LOC_Os03g46080Os.41695.3.S1_x_at10/113+26011884..26016524Transposable element protein, putative, MuDR
LOC_Os03g46080Os.41695.2.S1_x_at9/113+26011884..26016524Transposable element protein, putative, MuDR
LOC_Os03g46080Os.41695.4.S1_x_at1/113+26011884..26016524Transposable element protein, putative, MuDR
LOC_Os03g46090Os.22486.1.A1_at5/113+26019165..26022817Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os03g46100Os.5503.2.S1_at11/113+26024686..26027067Cupin family protein, expressed
LOC_Os03g46100Os.5503.1.S1_at11/113+26024686..26027067Cupin family protein, expressed
LOC_Os03g46100Os.49642.1.S1_x_at7/113+26024686..26027067Cupin family protein, expressed
LOC_Os03g46110OsAffx.13376.1.S1_s_at11/113+26027787..26030746expressed protein
LOC_Os03g46120OsAffx.25572.1.S1_at11/113+26032915..26035358F-box domain containing protein
LOC_Os03g46130NANA3+26037960..26038328retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g46134OsAffx.16205.1.S1_at1/113+26043990..26046315hypothetical protein
LOC_Os03g46134Os.31535.1.A1_at1/113+26043990..26046315hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22486.1.A1_at--891--10511Chr03:26022214..26022238 (25 bp)
TTCAGATACCGAGCCAAACCCAATT
LOC_Os03g46090
Os.22486.1.A1_at--474--171Chr03:26022236..26022260 (25 bp)
ATTTTGCAGCTTTGCTCGTTCTACC
LOC_Os03g46090
Os.22486.1.A1_at--817--7931Chr03:26022275..26022299 (25 bp)
GGATGAACTACCATACCCAACTTAT
LOC_Os03g46090
Os.22486.1.A1_at--154--8091Chr03:26022347..26022485 (25 bp)
GGAGCCAAGACATTCTTCAGTCCCA
LOC_Os03g46090
Os.22486.1.A1_at--1141--3571Chr03:26022505..26022529 (25 bp)
CATTTCTCCCAAGATTCCAGCAATT
LOC_Os03g46090
Os.22486.1.A1_at--723--5231Chr03:26022869..26022893 (25 bp)
GAATCTAACAATCCGCGAGTACCAG
NONE
Os.22486.1.A1_at--540--10271Chr03:26022969..26022993 (25 bp)
TTTGCAGTGTGCTTTTGGATACCCC
NONE
Os.22486.1.A1_at--651--10851Chr03:26022983..26023007 (25 bp)
TTGGATACCCCTTCATCATACAGAA
NONE
Os.22486.1.A1_at--821--10631Chr03:26023019..26023043 (25 bp)
TTCGCCACCATTTGTACTACTTGAA
NONE
Os.22486.1.A1_at--523--5571Chr03:26023041..26023065 (25 bp)
GAAAGGCTTTGTTTCCTCTTTTGCT
NONE
Os.22486.1.A1_at--496--1671Chr03:26023105..26023129 (25 bp)
AGCCCCTTGGGCACTGATATTTAAT
NONE
Target Sequence 
TTCAGATACCGAGCCAAACCCAATTTTGCAGCTTTGCTCGTTCTACCTCTCTAATGGGGGTGGATGAACTACCATACCCA
ACTTATCCACGCAGTTACACAGATATCAATTTTTATTGATTGTGTATCTCGATGGAGCCAAGACATTCTTCAGTCCCAGA
ATACACCAGATGAACTTCATTTCTCCCAAGATTCCAGCAATTGGAATATTGTCAGCCAACAGATACTCAAGGAGATGCTT
TCTAATTGTAAAATTAGGAAGATTTGCGCAGTCAAGCAAAGTTTTGAATCTAACAATCCGCGAGTACCAGTTTACAACAG
CAACCNAAAAAAAAAGAGGAGAGTTTTAGTTCCGAAATAAGCTAATCACTAACAACTGAAGCTGATTTGCAGTGTGCTTT
TGGATACCCCTTCATCATACAGAATTCCTTTTTCCTTCGCCACCATTTGTACTACTTGAAAGGCTTTGTTTCCTCTTTTG
CTTTNCTTTCTTTTTTGTTCTTGGTCTTCTGATGTAACAAGAGCCCCTTGGGCACTGATATTTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22486.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis