Browse Element(s) Details


Os.5503.2.S1_at

Description gb:U45322.1
DB_XREF= gi:4097101
TID=Os.5503.2
CNT=22
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.5503 (NCBI UniGene Cluster)
UG_TITLE=Globulin-like protein mRNA, clone Ose710, partial cds
DEF=Oryza sativa globulin-like protein mRNA, clone Ose710, partial cds.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4610011/11Cupin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g46080Os.41695.5.S1_x_at10/113+26011884..26016524Transposable element protein, putative, MuDR
LOC_Os03g46080Os.41695.3.S1_x_at10/113+26011884..26016524Transposable element protein, putative, MuDR
LOC_Os03g46080Os.41695.2.S1_x_at9/113+26011884..26016524Transposable element protein, putative, MuDR
LOC_Os03g46080Os.41695.4.S1_x_at1/113+26011884..26016524Transposable element protein, putative, MuDR
LOC_Os03g46090Os.22486.1.A1_at5/113+26019165..26022817Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os03g46100Os.5503.2.S1_at11/113+26024686..26027067Cupin family protein, expressed
LOC_Os03g46100Os.5503.1.S1_at11/113+26024686..26027067Cupin family protein, expressed
LOC_Os03g46100Os.49642.1.S1_x_at7/113+26024686..26027067Cupin family protein, expressed
LOC_Os03g46110OsAffx.13376.1.S1_s_at11/113+26027787..26030746expressed protein
LOC_Os03g46120OsAffx.25572.1.S1_at11/113+26032915..26035358F-box domain containing protein
LOC_Os03g46130NANA3+26037960..26038328retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g46134OsAffx.16205.1.S1_at1/113+26043990..26046315hypothetical protein
LOC_Os03g46134Os.31535.1.A1_at1/113+26043990..26046315hypothetical protein
LOC_Os03g46140OsAffx.25573.1.S1_at11/113+26048006..26049494F-box domain containing protein
LOC_Os03g46150Os.50969.1.S1_x_at11/113+26050181..26051131Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g46150Os.50969.1.S1_at11/113+26050181..26051131Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g46150Os.50796.1.S1_at11/113+26050181..26051131Protease inhibitor/seed storage/LTP family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045735molecular_functionnutrient reservoir activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5503.2.S1_at--857--9271Chr03:26025233..26025257 (25 bp)
TCCGGCCACCCGATCGTGGTGACGT
LOC_Os03g46100
Os.5503.2.S1_at--755--1391Chr03:26024923..26024947 (25 bp)
AGACGCTCCTGAGGATGGCAGCCGC
LOC_Os03g46100
Os.5503.2.S1_at--369--1131Chr03:26024859..26024883 (25 bp)
AGTGCGTGAGCGGTGAGCCATCCAA
LOC_Os03g46100
Os.5503.2.S1_at--796--1631Chr03:26024851..26024875 (25 bp)
AGCGGTGAGCCATCCAAGCTGCCGG
LOC_Os03g46100
Os.5503.2.S1_at--946--8451Chr03:26024806..26024830 (25 bp)
TGGCCTCGACGCGTGTGTTGTAGCT
LOC_Os03g46100
Os.5503.2.S1_at--753--5791Chr03:26024799..26024823 (25 bp)
GACGCGTGTGTTGTAGCTTTTGTAA
LOC_Os03g46100
Os.5503.2.S1_at--1042--4871Chr03:26024784..26024808 (25 bp)
GCTTTTGTAATTAGGCGGGAACGAG
LOC_Os03g46100
Os.5503.2.S1_at--322--5591Chr03:26024758..26024782 (25 bp)
GAAATAAGTGGGTGGCTCCCTCTGT
LOC_Os03g46100
Os.5503.2.S1_at--33--9791Chr03:26024754..26024778 (25 bp)
TAAGTGGGTGGCTCCCTCTGTGCGA
LOC_Os03g46100
Os.5503.2.S1_at--1079--3771Chr03:26024739..26024763 (25 bp)
CTCTGTGCGACTATCTCCATATAAG
LOC_Os03g46100
Os.5503.2.S1_at--350--7051Chr03:26024697..26024721 (25 bp)
GTAAGAGTTTGCAAATGTCGTTTTT
LOC_Os03g46100
Target Sequence 
TCCGGCCACCCGATCGTGGTGACGTCGTCNCGCNGACAGCACCCTCCAGATCGTCTNCTTCGACGTCCACGCCAACAACA
ACGNGNGGATNTACNTCNCCGGGATGANCAGCNTGNTGAAGAANCTNGACCCGCAGGCCAAGGAGCTGGCGTTCGCGGCG
AGCGCGAGGGAGGTGGACGAGCTNGNTCAACGCGCAGCAGGAGTCCGCGTTCCTCGCCGGCCCGGAGAAGAGCNNNNNCC
GCGGCGAGGAATCGGAGGACGAAGACCGCCGCCGCCNCNNCAGCCACCGTGGNCGCGGCGACGAGGCGGTGGAGACGCTC
CTGAGGATGGCAGCCGCTGCGGTGTGNNNCNCTCCGCGGCGACGAGCGGCGTGGCGAGTGCGTGAGCGGTGAGCCATCCA
AGCTGCCGGGCGAGCGAGATGCGGGAGTTTGGCCTCGACGCGTGTGTTGTAGCTTTTGTAATTAGGCGGGAACGAGTGAA
ATAAGTGGGTGGCTCCCTCTGTGCGACTATCTCCATATAAGTAAATACTGCTACATAAGTAAGAGTTTGCAAATGTCGTT
TTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5503.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis