Browse Element(s) Details


Os.50973.1.S1_at

Description gb:AK059847.1
DB_XREF= gi:32969865
TID=Os.50973.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.50973 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-207-A09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-206-F04, full insert sequence.
FL= gb:AK059847.1 gb:AK106082.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2004011/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g20000OsAffx.24338.1.S1_at11/112+11771411..11777938hypothetical protein
LOC_Os02g20010NANA2+11779222..11785227retrotransposon protein, putative, LINE subclass
LOC_Os02g20020OsAffx.22947.1.S1_x_at7/112+11790432..11795016retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g20020OsAffx.22947.2.S1_x_at4/112+11790432..11795016retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g20020OsAffx.22947.3.S1_x_at2/112+11790432..11795016retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g20020OsAffx.22947.5.S1_x_at2/112+11790432..11795016retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g20030NANA2+11795827..11796300retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g20040Os.50973.1.S1_at11/112+11798880..11799843transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g20050NANA2+11801936..11805226transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g20060OsAffx.12126.1.S1_at11/112+11814272..11814752hypothetical protein
LOC_Os02g20070Os.46995.1.S1_at1/112+11817440..11819648retrotransposon protein, putative, unclassified
LOC_Os02g20070Os.46995.1.S1_x_at1/112+11817440..11819648retrotransposon protein, putative, unclassified
LOC_Os02g20080NANA2+11824825..11827638retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50973.1.S1_at--1023--4671Chr02:11799390..11799414 (25 bp)
GCGGTGTTGGTGTCCATATAGGTCA
LOC_Os02g20040
Os.50973.1.S1_at--243--7671Chr02:11799189..11799213 (25 bp)
GGGTTGGATCAACAAGTTCTGCAAT
LOC_Os02g20040
Os.50973.1.S1_at--106--10611Chr02:11799173..11799197 (25 bp)
TTCTGCAATAGGAGGTGGCTCTGGA
LOC_Os02g20040
Os.50973.1.S1_at--803--8311Chr02:11799133..11799157 (25 bp)
GGCTAAGAATTTGCTCTGATCAATT
LOC_Os02g20040
Os.50973.1.S1_at--426--9831Chr02:11799085..11799109 (25 bp)
TAAATAACCCTCTCCAGTGAACACT
LOC_Os02g20040
Os.50973.1.S1_at--36--7871Chr02:11799044..11799068 (25 bp)
GGTATCGAATCCAACAAAGTGTGAG
LOC_Os02g20040
Os.50973.1.S1_at--95--7011Chr02:11799016..11799040 (25 bp)
GTACTGTTATATACCATGTTTGGCT
LOC_Os02g20040
Os.50973.1.S1_at--658--4331Chr02:11799003..11799027 (25 bp)
CCATGTTTGGCTTTTTGCACATTTG
LOC_Os02g20040
Os.50973.1.S1_at--241--6251Chr02:11798979..11799003 (25 bp)
GATGTGCCTAGTAATTTGTCGGTTG
LOC_Os02g20040
Os.50973.1.S1_at--308--6631Chr02:11798958..11798982 (25 bp)
GTTGTGAAGTACTAACCGACATCTT
LOC_Os02g20040
Os.50973.1.S1_at--385--4751Chr02:11798913..11798937 (25 bp)
GCTGATCAAACTAGCATACGAGTGA
LOC_Os02g20040
Target Sequence 
GCGGTGTTGGTGTCCATATAGGTCATGGTGGAGTGAGTATAAGCACAGGGGGTGGTGGTGGTGCTGGTGGAGGTGAAAGT
GCGGGAAGTAGCGGAGGTGGATTTGGTGGAGGAAATGGAGTTGGCCGTGCTGGGAATGCAGTGGGAGGCGGCGGGGGTTC
TGGTAGCGTGATTGGTAGTAGCGGAAGCGGAGGAGGTAGTGGGGTTGGATCAACAAGTTCTGCAATAGGAGGTGGCTCTG
GAAGTGGTGGTGGACAAGGCTAAGAATTTGCTCTGATCAATTATATGGTGTATTTAATTTTAATCTAAATAACCCTCTCC
AGTGAACACTATATAGGTGAAAACATGGTATCGAATCCAACAAAGTGTGAGTATGTACTGTTATATACCATGTTTGGCTT
TTTGCACATTTGATGTGCCTAGTAATTTGTCGGTTGTGAAGTACTAACCGACATCTTATATTGTAATATAATTGTATGCT
GATCAAACTAGCATACGAGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50973.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis