Browse Element(s) Details


Os.50999.1.S1_at

Description gb:AK060073.1
DB_XREF= gi:32970091
TID=Os.50999.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50999 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023038I11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-306-B04, full insert sequence.
FL= gb:AK069967.1 gb:AK060073.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6909010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g69050Os.11338.1.S1_at11/111+40454264..40459522lysine ketoglutarate reductase trans-splicing related 1, putative, expressed
LOC_Os01g69060Os.17227.1.S1_at10/111+40459911..40465200hydrolase, putative, expressed
LOC_Os01g69070Os.17449.1.A1_at11/111+40463075..40469609Auxin Efflux Carrier family protein, expressed
LOC_Os01g69080Os.11114.1.S1_at11/111+40473633..40477673Acyl-desaturase, chloroplast precursor, putative, expressed
LOC_Os01g69090Os.50999.1.S1_at10/111+40480075..40484031expressed protein
LOC_Os01g69100Os.4875.1.S1_at11/111+40494589..40497025expressed protein
LOC_Os01g69110Os.50224.1.S1_at11/111+40497771..40500139expressed protein
LOC_Os01g69120Os.27831.1.S1_at10/111+40502554..40509529expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50999.1.S1_at--430--7111Chr01:40480355..40480379 (25 bp)
GTCACCAAGAGCGTTTATCCGGCAG
LOC_Os01g69090
Os.50999.1.S1_at--495--10151Chr01:40480340..40480364 (25 bp)
TATCCGGCAGCATCTTGAATCTCTG
LOC_Os01g69090
Os.50999.1.S1_at--367--5251Chr01:40480324..40480348 (25 bp)
GAATCTCTGGATGCTTGATCCGTAC
LOC_Os01g69090
Os.50999.1.S1_at--859--10751Chr01:40480288..40480312 (25 bp)
TTGGTGGTTCCTTGGTTGGCCCTAG
LOC_Os01g69090
Os.50999.1.S1_at--454--3691Chr01:40480267..40480291 (25 bp)
CTAGTGCGTGCCGTGAACTGTACAC
LOC_Os01g69090
Os.50999.1.S1_at--572--5411Chr01:40480253..40480277 (25 bp)
GAACTGTACACTGCGCCTGGTTGGT
LOC_Os01g69090
Os.50999.1.S1_at--644--8571Chr01:40480232..40480256 (25 bp)
TGGTTCTTTTTTGTCTTTCGAGAGT
LOC_Os01g69090
Os.50999.1.S1_at--716--7631Chr01:40480205..40480229 (25 bp)
GGGAGTTTTTTGTCCGCATGAGACT
LOC_Os01g69090
Os.50999.1.S1_at--436--91Chr01:40480158..40480182 (25 bp)
ATTCCTTGTGGATCGGTGCTACTAT
LOC_Os01g69090
Os.50999.1.S1_at--112--10111Chr01:40480136..40480160 (25 bp)
TATGGCAGACTCAGGCTTGTGCTTT
LOC_Os01g69090
Os.50999.1.S1_at--975--10171Chr01:40480075..40480099 (25 bp)
TATAATGTATCGTTTCTCTGTGCTC
NONE
Target Sequence 
GTCACCAAGAGCGTTTATCCGGCAGCATCTTGAATCTCTGGATGCTTGATCCGTACCGTTTGCTCCGTTGGTGGTTCCTT
GGTTGGCCCTAGTGCGTGCCGTGAACTGTACACTGCGCCTGGTTGGTTCTTTTTTGTCTTTCGAGAGTTGGGGAGTTTTT
TGTCCGCATGAGACTGAAACTGAAGGGTATATTGTGAATTCCTTGTGGATCGGTGCTACTATGGCAGACTCAGGCTTGTG
CTTTGGTACGGTGGAATGATAGTCTACTCATTCGTATATGTATAATGTATCGTTTCTCTGTGCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50999.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis