Browse Element(s) Details


Os.51013.1.S1_s_at

Description gb:AK104758.1
DB_XREF= gi:32989967
TID=Os.51013.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.51013 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-038-G08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-038-G08, full insert sequence.
FL= gb:AK060159.1 gb:AK104758.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1728011/11Aph-1 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g17230OsAffx.24289.1.S1_at10/112+9877603..9879274flavin-containing monooxygenase, putative
LOC_Os02g17230OsAffx.30914.1.S1_x_at1/112+9877603..9879274flavin-containing monooxygenase, putative
LOC_Os02g17240Os.8089.1.S1_at11/112+9885607..9888391pollen-specific kinase partner protein, putative, expressed
LOC_Os02g17250Os.18074.1.A1_at11/112+9888628..9893606expressed protein
LOC_Os02g17260OsAffx.24290.1.S1_at11/112+9894795..9895713hypothetical protein
LOC_Os02g17270OsAffx.24291.1.S1_at11/112+9898845..9899207hypothetical protein
LOC_Os02g17280Os.51013.1.S1_s_at11/112+9902629..9907868Aph-1 protein, expressed
LOC_Os02g17280Os.51013.1.S1_at11/112+9902629..9907868Aph-1 protein, expressed
LOC_Os02g17280Os.52125.1.S1_at11/112+9902629..9907868Aph-1 protein, expressed
LOC_Os02g17292Os.50288.2.S1_at11/112+9912535..9919767retrotransposon protein, putative, unclassified, expressed
LOC_Os02g17292Os.50288.1.S1_at9/112+9912535..9919767retrotransposon protein, putative, unclassified, expressed
LOC_Os02g17304Os.54023.1.S1_at11/112+9922654..9928338NB-ARC domain containing protein, expressed
LOC_Os02g17304OsAffx.25952.1.S1_s_at2/112+9922654..9928338NB-ARC domain containing protein, expressed
LOC_Os02g17304OsAffx.13573.1.S1_at1/112+9922654..9928338NB-ARC domain containing protein, expressed
LOC_Os02g17320Os.5917.1.S1_a_at11/112+9928817..9937359uridine kinase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51013.1.S1_s_at--1144--7131Chr02:9906114..9906138 (25 bp)
GTCTTTTTCTGCCTCAGCCTTTTAA
LOC_Os02g17280
Os.51013.1.S1_s_at--131--4311Chr02:9906131..9906155 (25 bp)
CCTTTTAACTCCAGCATTCGGCAGA
LOC_Os02g17280
Os.51013.1.S1_s_at--406--111Chr02:9906146..9906170 (25 bp)
ATTCGGCAGAGCTACATTTTATGTT
LOC_Os02g17280
Os.51013.1.S1_s_at--1047--991Chr02:9906183..9906207 (25 bp)
AGGATGCCATTTTTCCTTGTGTCAG
LOC_Os02g17280
Os.51013.1.S1_s_at--812--3611Chr02:9906198..9906460 (25 bp)
CTTGTGTCAGCCATTATTTCTCTTG
LOC_Os02g17280
Os.51013.1.S1_s_at--319--10211Chr02:9906450..9906474 (25 bp)
TATTTCTCTTGGATTCTTGGTCATC
LOC_Os02g17280
Os.51013.1.S1_s_at--992--10851Chr02:9906466..9906490 (25 bp)
TTGGTCATCCACACATTCTCAATGA
LOC_Os02g17280
Os.51013.1.S1_s_at--689--2831Chr02:9906533..9906557 (25 bp)
AAGTATTTGTCCCAGTTGTTCATCT
LOC_Os02g17280
Os.51013.1.S1_s_at--702--3551Chr02:9906553..9906573 (21 bp)
CATCTGATTGCTTCTGTAATGACAC
LOC_Os02g17280
Os.51013.1.S1_s_at--660--5631Chr02:9907533..9907557 (25 bp)
GACACTAATCAATCTTGCACCTGGG
LOC_Os02g17280
Os.51013.1.S1_s_at--461--8591Chr02:9907569..9907593 (25 bp)
TGGTACACCACTATTATGCGTCATG
LOC_Os02g17280
Target Sequence 
GTCTTTTTCTGCCTCAGCCTTTTAACTCCAGCATTCGGCAGAGCTACATTTTATGTTGAAAAGTGCTCAAGGATGCCATT
TTTCCTTGTGTCAGCCATTATTTCTCTTGGATTCTTGGTCATCCACACATTCTCAATGATTATTGCTTTTAATGGGTACG
ACGAGAGAAAGAGAAGTGATCAAGTATTTGTCCCAGTTGTTCATCTGATTGCTTCTGTAATGACACTAATCAATCTTGCA
CCTGGGGGCTGCGTAATTGGTACACCACTATTATGCGTCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51013.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis