Browse Element(s) Details


Os.51026.1.S1_x_at

Description gb:AK060228.1
DB_XREF= gi:32970246
TID=Os.51026.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51026 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-002-G12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-002-G12, full insert sequence.
FL= gb:AK060228.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3062011/11UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g303301/11UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g306101/11UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os07g303691/11UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os07g307601/11UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g306901/11UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os07g304691/11UDP-glucoronosyl and UDP-glucosyl transferase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g30590OsAffx.28683.1.S1_at10/117+18101049..18101918Protease inhibitor/seed storage/LTP family protein
LOC_Os07g30600OsAffx.5485.1.S1_at11/117+18104531..18109557Male sterility protein
LOC_Os07g30610Os.51026.1.S1_x_at1/117+18112018..18113466UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os07g30620Os.51026.1.S1_x_at11/117+18122857..18124650UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g30620Os.51026.1.S1_at11/117+18122857..18124650UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g30630OsAffx.30032.3.S1_at11/117+18127077..18127925hypothetical protein
LOC_Os07g30630OsAffx.30032.1.S1_at2/117+18127077..18127925hypothetical protein
LOC_Os07g30640OsAffx.5486.1.S1_at9/117+18131662..18133654ubiquitin fusion protein, putative, expressed
LOC_Os07g30640Os.16404.1.S1_at1/117+18131662..18133654ubiquitin fusion protein, putative, expressed
LOC_Os07g30650NANA7+18135064..18138430retrotransposon protein, putative, unclassified
LOC_Os07g30660NANA7+18138785..18141974hypothetical protein
LOC_Os07g30670Os.52588.1.S1_at11/117+18147391..181490012Fe-2S iron-sulfur cluster binding domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51026.1.S1_x_at--945--9577Chr07:18032578..18032602 (25 bp)
TCTTCGCCGACCAGCAGATCAACAG
LOC_Os07g30469
Os.51026.1.S1_x_at--596--5671Chr07:18123246..18123270 (25 bp)
GACATCGCCGATGACGGTGGGTCAT
LOC_Os07g30620
Os.51026.1.S1_x_at--696--9611Chr07:18123225..18123249 (25 bp)
TCATCGGCGGCAGAGTTCCAGCGGC
LOC_Os07g30620
Os.51026.1.S1_x_at--388--9411Chr07:18123200..18123224 (25 bp)
TCGTCGGTTTCATCAAGGAGCTAAG
LOC_Os07g30620
Os.51026.1.S1_x_at--614--5911Chr07:18123183..18123207 (25 bp)
GAGCTAAGCCAGAGCATGGCGGACA
LOC_Os07g30620
Os.51026.1.S1_x_at--662--4671Chr07:18123165..18123189 (25 bp)
GCGGACAGTAAGTCTGACGACCTCT
LOC_Os07g30620
Os.51026.1.S1_x_at--272--5691Chr07:18123150..18123174 (25 bp)
GACGACCTCTTAACGGCGGGTATCA
LOC_Os07g30620
Os.51026.1.S1_x_at--894--8351Chr07:18123136..18123160 (25 bp)
GGCGGGTATCAGGAATGCACTTAAT
LOC_Os07g30620
Os.51026.1.S1_x_at--706--7011Chr07:18123094..18123118 (25 bp)
GTACTTAATAATACTTGTCGTTACA
LOC_Os07g30620
Os.51026.1.S1_x_at--1160--9871Chr07:18123073..18123097 (25 bp)
TACATACAAGTACACGGTCTCAAAA
LOC_Os07g30620
Os.51026.1.S1_x_at--561--10131Chr07:18123017..18123041 (25 bp)
TATGCACGTGTGTATGACTGTATGT
LOC_Os07g30620
Target Sequence 
TCTTCGCCGACCAGCAGATCAACAGCAGGTTCGTGGGCGGCGTGTGGAGGACGGGGCTGGACATGAAGGACGTGTGCGAC
GCCGCCGTCGTGGAGAGGATGGTGAGGGAGGCGATGGAGTCCGCGGAGATCAGGGCGTCGGCTCAGGCGCTGGCGCGGCA
GCTGAGGCGGGACATCGCCGATGACGGTGGGTCATCGGCGGCAGAGTTCCAGCGGCTCGTCGGTTTCATCAAGGAGCTAA
GCCAGAGCATGGCGGACAGTAAGTCTGACGACCTCTTAACGGCGGGTATCAGGAATGCACTTAATTAACATTGTGTTAAG
ATGTACTTAATAATACTTGTCGTTACATACAAGTACACGGTCTCAAAAAAACAATCTTGATTATTATTTTCTATATATAT
ATGCACGTGTGTATGACTGTATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51026.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis