Browse Element(s) Details


Os.51027.1.S1_at

Description gb:AK060236.1
DB_XREF= gi:32970254
TID=Os.51027.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51027 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-003-C01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-003-C01, full insert sequence.
FL= gb:AK060236.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6998410/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g69950Os.51456.1.S1_at11/111+40780707..4078352850S ribosomal protein L27, chloroplast precursor, putative, expressed
LOC_Os01g69950Os.4997.1.S1_s_at11/111+40780707..4078352850S ribosomal protein L27, chloroplast precursor, putative, expressed
LOC_Os01g69950Os.46403.1.S1_at8/111+40780707..4078352850S ribosomal protein L27, chloroplast precursor, putative, expressed
LOC_Os01g69960Os.23498.1.S1_at11/111+40786850..40788332expressed protein
LOC_Os01g69970Os.6419.1.S1_at11/111+40789858..40794608Periodic tryptophan protein 1 homolog, putative, expressed
LOC_Os01g69980Os.12146.1.S1_at10/111+40804089..40805984TCP family transcription factor containing protein, expressed
LOC_Os01g69980OsAffx.15397.1.S1_x_at1/111+40804089..40805984TCP family transcription factor containing protein, expressed
LOC_Os01g69984Os.51027.1.S1_at10/111+40805985..40806305NA
LOC_Os01g69990Os.17442.1.S1_at10/111+40810155..40816509GYF domain containing protein, expressed
LOC_Os01g70000Os.55300.1.S1_at11/111+40820543..40822563expressed protein
LOC_Os01g70010OsAffx.11801.1.S1_at11/111+40822975..4082512860S ribosomal protein L7a, putative, expressed
LOC_Os01g70020Os.18596.1.S1_at11/111+40827996..40834366expressed protein
LOC_Os01g70020Os.50767.1.S1_x_at11/111+40827996..40834366expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51027.1.S1_at--16--6511Chr01:40806036..40806060 (25 bp)
GATTTGGGTGACCTGTCTATTAATA
LOC_Os01g69984
Os.51027.1.S1_at--264--3571Chr01:40806078..40806102 (25 bp)
CATCAACAATGTGTGCTTGCAGGCA
LOC_Os01g69984
Os.51027.1.S1_at--158--3631Chr01:40806093..40806117 (25 bp)
CTTGCAGGCATGGTGTCAACGTGTC
LOC_Os01g69984
Os.51027.1.S1_at--207--7751NONE
GGTGTCAACGTGTCATGGTGAAGAT
NONE
Os.51027.1.S1_at--505--10591Chr01:40806142..40806166 (25 bp)
TTCTCTGTAGAGCATGTTTTACACT
LOC_Os01g69984
Os.51027.1.S1_at--234--6811Chr01:40806157..40806181 (25 bp)
GTTTTACACTTTTAGTGCCTCATAT
LOC_Os01g69984
Os.51027.1.S1_at--426--9191Chr01:40806172..40806196 (25 bp)
TGCCTCATATACAGCACACAATTAT
LOC_Os01g69984
Os.51027.1.S1_at--813--3131Chr01:40806191..40806215 (25 bp)
AATTATACAGTAGAGCAATGCTTCA
LOC_Os01g69984
Os.51027.1.S1_at--878--2271Chr01:40806228..40806252 (25 bp)
AAATCGCATGATGTGGCGCTGTAAA
LOC_Os01g69984
Os.51027.1.S1_at--901--8732Chr04:23768533..23768555 (23 bp)
TGTAAATTCCAAGCATTCCCACGGT
NONE
Os.51027.1.S1_at--1062--3237Chr09:15630748..15630772 (25 bp)
CAAGCATTCCCACGGTGTTTAAGTA
NONE
Target Sequence 
GATTTGGGTGACCTGTCTATTAATAGAACGGAACAGCAGAAACATCAACAATGTGTGCTTGCAGGCATGGTGTCAACGTG
TCATGGTGAAGATAAATGTGTAATGTTTCTCTGTAGAGCATGTTTTACACTTTTAGTGCCTCATATACAGCACACAATTA
TACAGTAGAGCAATGCTTCATGATTGAGAAAAAAATCGCATGATGTGGCGCTGTAAATTCCAAGCATTCCCACGGTGTTT
AAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51027.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis