Browse Element(s) Details


Os.51052.1.S1_at

Description gb:AK060373.1
DB_XREF= gi:32970391
TID=Os.51052.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51052 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-009-C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-009-C05, full insert sequence.
FL= gb:AK060373.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5053011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g50500OsAffx.3564.1.S1_s_at11/113+28780000..28786002expressed protein
LOC_Os03g50500Os.3075.1.S1_s_at11/113+28780000..28786002expressed protein
LOC_Os03g50510OsAffx.13440.1.S1_at10/113+28788451..28793744Threonine dehydratase biosynthetic, chloroplast precursor, putative, expressed
LOC_Os03g50520OsAffx.13442.2.S1_at11/113+28796019..28801712Dynamin-related protein 1C, putative, expressed
LOC_Os03g50520Os.38545.1.S1_s_at11/113+28796019..28801712Dynamin-related protein 1C, putative, expressed
LOC_Os03g50520Os.9442.1.S1_s_at11/113+28796019..28801712Dynamin-related protein 1C, putative, expressed
LOC_Os03g50530Os.51052.1.S1_at11/113+28801324..28802828expressed protein
LOC_Os03g50540Os.12117.1.S1_at11/113+28804859..28809309NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os03g50550NANA3+28811030..28812067Protein kinase domain containing protein
LOC_Os03g50560Os.5959.1.S1_at11/113+28818239..28822369RRM-containing protein, putative, expressed
LOC_Os03g50570OsAffx.13444.1.S1_at10/113+28824751..28830027expressed protein
LOC_Os03g50570OsAffx.19786.1.S1_at3/113+28824751..28830027expressed protein
LOC_Os03g50570OsAffx.32242.1.S1_at2/113+28824751..28830027expressed protein
LOC_Os03g50570OsAffx.32330.1.S1_x_at2/113+28824751..28830027expressed protein
LOC_Os03g50570OsAffx.23830.1.S1_at1/113+28824751..28830027expressed protein
LOC_Os03g50570Os.29056.1.S1_s_at1/113+28824751..28830027expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51052.1.S1_at--317--1831Chr03:28802637..28802661 (25 bp)
ACGCCGTCGGCATTGTGCGGACGAA
LOC_Os03g50530
Os.51052.1.S1_at--244--9391Chr03:28802478..28802502 (25 bp)
TCGTCAAGGCCAGGGTCGACGACGA
LOC_Os03g50530
Os.51052.1.S1_at--1104--3991Chr03:28801957..28802462 (25 bp)
CGTCTTCAAGGGATTCTCGTCGAGG
LOC_Os03g50530
Os.51052.1.S1_at--619--3031Chr03:28801842..28801866 (25 bp)
AATCCCACCAACATCGAGTACCTGG
LOC_Os03g50530
Os.51052.1.S1_at--189--9371Chr03:28801829..28801853 (25 bp)
TCGAGTACCTGGAGAAGGATCTTCC
LOC_Os03g50530
Os.51052.1.S1_at--898--2791Chr03:28801815..28801839 (25 bp)
AAGGATCTTCCATGGGACGACTTCA
LOC_Os03g50530
Os.51052.1.S1_at--451--771Chr03:28801804..28801828 (25 bp)
ATGGGACGACTTCAAGAGCCGCCTC
LOC_Os03g50530
Os.51052.1.S1_at--84--6971Chr03:28801765..28801789 (25 bp)
GTAGCTCTACCAAGAATGCGGATCC
LOC_Os03g50530
Os.51052.1.S1_at--849--611Chr03:28801750..28801774 (25 bp)
ATGCGGATCCTTTCAGTTGGCAACA
LOC_Os03g50530
Os.51052.1.S1_at--870--8231Chr03:28801732..28801756 (25 bp)
GGCAACAAGGCATCTAAAATCTCTC
LOC_Os03g50530
Os.51052.1.S1_at--1077--231Chr03:28801702..28801726 (25 bp)
ATATCAGTGGAGGTGCTAAATCAAC
LOC_Os03g50530
Target Sequence 
ACGCCGTCGGCATTGTGCGGACGAATCGCCGCCGCGGCGCCGTCGCCTGCAGGAGGCGGCGGGTGCGGCACGAGGAGGAG
GACGAGGAGGAGTACGGGCACAACGAGGAGATGGCGCGGTTGGAGCGGTACAACGAGGGCGCGCGCGACCAAGCACTCCT
CGTCAAGGCCAGGGTCGACGACGAGGTGGAGGTCGTGCTCGTCTTCAAGGGATTCTCGTCGAGGCTGAGCGGGAGAACGG
CGGCGGATCCAGCGATGAGCGTGCTGCCGGAGAGGGCGATCATACAGACGGTGGACGTGGTGAGGGGCCCGTTCAATCCC
ACCAACATCGAGTACCTGGAGAAGGATCTTCCATGGGACGACTTCAAGAGCCGCCTCCATTAGCAAAAAATGTAGCTCTA
CCAAGAATGCGGATCCTTTCAGTTGGCAACAAGGCATCTAAAATCTCTCATGATATATCAGTGGAGGTGCTAAATCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51052.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis