Browse Element(s) Details

Description

gb:AK068431.1
DB_XREF= gi:32978449
TID=Os.51057.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51057 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013154E14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013154E14, full insert sequence.
FL= gb:AK068431.1 gb:AK060394.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os01g43150	10/11	ATP-dependent metalloprotease FtsH family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os01g43110	OsAffx.9127.2.S1_x_at	11/11	1	+	24919360..24923065	hypothetical protein
LOC_Os01g43120	Os.26991.1.S1_x_at	11/11	1	+	24925029..24928701	DEAD/DEAH box helicase family protein, expressed
LOC_Os01g43120	Os.52507.1.S1_at	11/11	1	+	24925029..24928701	DEAD/DEAH box helicase family protein, expressed
LOC_Os01g43120	Os.26517.1.S1_at	1/11	1	+	24925029..24928701	DEAD/DEAH box helicase family protein, expressed
LOC_Os01g43130	Os.47953.1.S1_at	11/11	1	+	24929073..24932332	DEAD/DEAH box helicase family protein, expressed
LOC_Os01g43140	Os.41251.1.A1_at	6/11	1	+	24938537..24942334	Lipase family protein, expressed
LOC_Os01g43150	Os.51057.1.S1_s_at	11/11	1	+	24942951..24950000	ATP-dependent metalloprotease FtsH family protein, expressed
LOC_Os01g43150	Os.51057.1.S1_at	10/11	1	+	24942951..24950000	ATP-dependent metalloprotease FtsH family protein, expressed
LOC_Os01g43160	Os.15014.1.S1_at	11/11	1	+	24956118..24959175	glycoside hydrolase family 28 protein, putative, expressed
LOC_Os01g43170	Os.11720.1.S1_a_at	11/11	1	+	24960613..24966124	Polypyrimidine tract-binding protein homolog 1, putative, expressed
LOC_Os01g43180	OsAffx.11453.1.S1_at	11/11	1	+	24970072..24971066	Myb-like DNA-binding domain containing protein
LOC_Os01g43180	Os.37184.1.S1_at	2/11	1	+	24970072..24971066	Myb-like DNA-binding domain containing protein

Gene Ontology Classification

GO id	Type	Name
GO:0006510	biological_process	ATP-dependent proteolysis
GO:0010027	biological_process	thylakoid membrane organization and biogenesis
GO:0010205	biological_process	photoinhibition
GO:0010206	biological_process	photosystem II repair
GO:0005739	cellular_component	mitochondrion
GO:0009507	cellular_component	chloroplast
GO:0009535	cellular_component	thylakoid membrane (sensu Viridiplantae)
GO:0004176	molecular_function	ATP-dependent peptidase activity
GO:0008233	molecular_function	peptidase activity
GO:0008237	molecular_function	metallopeptidase activity
GO:0008270	molecular_function	zinc ion binding
GO:0016887	molecular_function	ATPase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.51057.1.S1_at--442--513	1	Chr01:24943033..24943057 (25 bp)	GCAAATCACATTTTTCTTAGACTCT	LOC_Os01g43150
Os.51057.1.S1_at--181--39	1	Chr01:24943029..24943053 (25 bp)	ATCACATTTTTCTTAGACTCTTTCT	LOC_Os01g43150
Os.51057.1.S1_at--1050--331	1	Chr01:24943027..24943051 (25 bp)	CACATTTTTCTTAGACTCTTTCTAC	LOC_Os01g43150
Os.51057.1.S1_at--70--983	1	Chr01:24942985..24943009 (25 bp)	TAAAACGTGCATACAACAGATGGTG	LOC_Os01g43150
Os.51057.1.S1_at--498--191	1	Chr01:24942981..24943005 (25 bp)	ACGTGCATACAACAGATGGTGAATT	LOC_Os01g43150
Os.51057.1.S1_at--40--777	1	Chr01:24942964..24942988 (25 bp)	GGTGAATTGGTGATACCCGGATCTC	LOC_Os01g43150
Os.51057.1.S1_at--132--521	1	Chr01:24942961..24942985 (25 bp)	GAATTGGTGATACCCGGATCTCAGA	LOC_Os01g43150
Os.51057.1.S1_at--897--861	2	Chr10:5387423..5387634 (25 bp)	TGGTGATACCCGGATCTCAGATGAA	NONE
Os.51057.1.S1_at--770--775	1	Chr01:24942956..24942980 (25 bp)	GGTGATACCCGGATCTCAGATGAAT	LOC_Os01g43150
Os.51057.1.S1_at--363--649	1	Chr01:24942953..24942977 (25 bp)	GATACCCGGATCTCAGATGAATCCT	LOC_Os01g43150
Os.51057.1.S1_at--22--181	1	Chr01:24942951..24942974 (24 bp)	ACCCGGATCTCAGATGAATCCTTCG	NONE

Target Sequence

GCAAATCACATTTTTCTTAGACTCTTTCTACCCAATTAATTTTGTAATTAAAACGTGCATACAACAGATGGTGAATTGGT
GATACCCGGATCTCAGATGAATCCTTCG

Expression Profiles

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project: