Browse Element(s) Details


Os.51103.1.S1_at

Description gb:AK060678.1
DB_XREF= gi:32970696
TID=Os.51103.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51103 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-029-C06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-029-C06, full insert sequence.
FL= gb:AK060678.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g333007/11Tat pathway signal sequence family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33240Os.9722.1.S1_at11/115+19405242..19407444DNA-directed RNA polymerase II 19 kDa polypeptide, putative, expressed
LOC_Os05g33260Os.27259.1.S1_at10/115+19407534..19414457expressed protein
LOC_Os05g33270Os.10474.1.S1_s_at11/115+19419990..19424042GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g33280Os.5229.1.S1_at11/115+19424390..19425948expressed protein
LOC_Os05g33290OsAffx.14935.1.S1_at10/115+19426854..19431019expressed protein
LOC_Os05g33300Os.27608.1.A1_at11/115+19431159..19434260Tat pathway signal sequence family protein, expressed
LOC_Os05g33300Os.51103.1.S1_s_at11/115+19431159..19434260Tat pathway signal sequence family protein, expressed
LOC_Os05g33300OsAffx.14936.1.S1_at9/115+19431159..19434260Tat pathway signal sequence family protein, expressed
LOC_Os05g33300Os.51103.1.S1_at7/115+19431159..19434260Tat pathway signal sequence family protein, expressed
LOC_Os05g33310Os.12714.1.S1_at1/115+19442499..19445837oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
LOC_Os05g33320OsAffx.14937.1.S1_at10/115+19448044..19450049expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51103.1.S1_at--147--391NONE
ATCACATTCCTAGAGGCCAAAGATG
NONE
Os.51103.1.S1_at--430--91NONE
ATTCCTAGAGGCCAAAGATGTAACA
NONE
Os.51103.1.S1_at--1051--1311NONE
AGAGGCCAAAGATGTAACAGACCTG
NONE
Os.51103.1.S1_at--476--8991Chr05:19434156..19434180 (25 bp)
TGAATCATATCATCTTATTTTTTGG
LOC_Os05g33300
Os.51103.1.S1_at--682--1271Chr05:19434204..19434228 (25 bp)
AGATAAAACATGTCCTCTACACCCA
LOC_Os05g33300
Os.51103.1.S1_at--1072--331Chr05:19434206..19434230 (25 bp)
ATAAAACATGTCCTCTACACCCAAA
LOC_Os05g33300
Os.51103.1.S1_at--467--3491Chr05:19434212..19434236 (25 bp)
CATGTCCTCTACACCCAAATGGGTG
LOC_Os05g33300
Os.51103.1.S1_at--299--1811Chr05:19434224..19434248 (25 bp)
ACCCAAATGGGTGTACGCAGCCAAA
LOC_Os05g33300
Os.51103.1.S1_at--659--2971Chr05:19434229..19434253 (25 bp)
AATGGGTGTACGCAGCCAAAGGATA
LOC_Os05g33300
Os.51103.1.S1_at--352--7751Chr05:19434233..19434257 (25 bp)
GGTGTACGCAGCCAAAGGATAATAC
LOC_Os05g33300
Os.51103.1.S1_at--504--7835Chr09:6217559..6217691 (25 bp)
GGATAATACAAGAGTACTTAGACCC
NONE
Target Sequence 
ATCACATTCCTAGAGGCCAAAGATGTAACAGACCTGGGCACTTTAAAGGAGGCATCAAAGATATTTGTACCTGGTGGCGC
AAAATTATACTCAGCTCGAACAATTAAAGTTAAGGATGAAGATGATATAAGGACATATTACTTTTATGAGTTTGGTGTGG
ACAAAGAACATGTTGCTGTAATGGCTACTGTGAATAGTGGAAAGACATATATTGCCGGTGCCACTGCTCCAGAGACAAAG
TGGGACGATGATGGCGTGAAGTTGCGATCGGCTGCTGTATCTTTGTCTGTTTTATGATGCAAAGCAGAATACCAAGCATT
TATTCAGAATTTCAGGCCGCAGCTGCATAGATGAATCATATCATCTTATTTTTTGGTCGTGTTTTTTTAGATAATAGATA
GATAAAACATGTCCTCTACACCCAAATGGGTGTACGCAGCCAAAGGATAATACAAGAGTACTTAGACCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51103.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis