Browse Element(s) Details


Os.51103.1.S1_s_at

Description gb:AK060678.1
DB_XREF= gi:32970696
TID=Os.51103.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51103 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-029-C06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-029-C06, full insert sequence.
FL= gb:AK060678.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3330011/11Tat pathway signal sequence family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33240Os.9722.1.S1_at11/115+19405242..19407444DNA-directed RNA polymerase II 19 kDa polypeptide, putative, expressed
LOC_Os05g33260Os.27259.1.S1_at10/115+19407534..19414457expressed protein
LOC_Os05g33270Os.10474.1.S1_s_at11/115+19419990..19424042GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g33280Os.5229.1.S1_at11/115+19424390..19425948expressed protein
LOC_Os05g33290OsAffx.14935.1.S1_at10/115+19426854..19431019expressed protein
LOC_Os05g33300Os.27608.1.A1_at11/115+19431159..19434260Tat pathway signal sequence family protein, expressed
LOC_Os05g33300Os.51103.1.S1_s_at11/115+19431159..19434260Tat pathway signal sequence family protein, expressed
LOC_Os05g33300OsAffx.14936.1.S1_at9/115+19431159..19434260Tat pathway signal sequence family protein, expressed
LOC_Os05g33300Os.51103.1.S1_at7/115+19431159..19434260Tat pathway signal sequence family protein, expressed
LOC_Os05g33310Os.12714.1.S1_at1/115+19442499..19445837oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
LOC_Os05g33320OsAffx.14937.1.S1_at10/115+19448044..19450049expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51103.1.S1_s_at--1161--2111Chr05:19432833..19432857 (25 bp)
ACAGACCTGGGCACTTTAAAGGAGG
LOC_Os05g33300
Os.51103.1.S1_s_at--165--3291Chr05:19432861..19432881 (21 bp)
CAAAGATATTTGTACCTGGTGGCGC
LOC_Os05g33300
Os.51103.1.S1_s_at--481--7551Chr05:19433497..19433521 (25 bp)
GTGGCGCAAAATTATACTCAGCTCG
LOC_Os05g33300
Os.51103.1.S1_s_at--677--5491Chr05:19433716..19433740 (25 bp)
GAACATGTTGCTGTAATGGCTACTG
LOC_Os05g33300
Os.51103.1.S1_s_at--194--2751Chr05:19434007..19434030 (24 bp)
AAGACATATATTGCCGGTGCCACTG
LOC_Os05g33300
Os.51103.1.S1_s_at--484--7791Chr05:19434021..19434045 (25 bp)
GGTGCCACTGCTCCAGAGACAAAGT
LOC_Os05g33300
Os.51103.1.S1_s_at--1014--8991Chr05:19434061..19434085 (25 bp)
TGAAGTTGCGATCGGCTGCTGTATC
LOC_Os05g33300
Os.51103.1.S1_s_at--839--4771Chr05:19434075..19434099 (25 bp)
GCTGCTGTATCTTTGTCTGTTTTAT
LOC_Os05g33300
Os.51103.1.S1_s_at--894--5131Chr05:19434103..19434127 (25 bp)
GCAAAGCAGAATACCAAGCATTTAT
LOC_Os05g33300
Os.51103.1.S1_s_at--120--10351Chr05:19434123..19434147 (25 bp)
TTTATTCAGAATTTCAGGCCGCAGC
LOC_Os05g33300
Os.51103.1.S1_s_at--741--9631Chr05:19434136..19434160 (25 bp)
TCAGGCCGCAGCTGCATAGATGAAT
LOC_Os05g33300
Target Sequence 
ACAGACCTGGGCACTTTAAAGGAGGCATCAAAGATATTTGTACCTGGTGGCGCAAAATTATACTCAGCTCGAACAATTAA
AGTTAAGGATGAAGATGATATAAGGACATATTACTTTTATGAGTTTGGTGTGGACAAAGAACATGTTGCTGTAATGGCTA
CTGTGAATAGTGGAAAGACATATATTGCCGGTGCCACTGCTCCAGAGACAAAGTGGGACGATGATGGCGTGAAGTTGCGA
TCGGCTGCTGTATCTTTGTCTGTTTTATGATGCAAAGCAGAATACCAAGCATTTATTCAGAATTTCAGGCCGCAGCTGCA
TAGATGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51103.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis