Browse Element(s) Details


Os.51109.1.S1_at

Description gb:AK060695.1
DB_XREF= gi:32970713
TID=Os.51109.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51109 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-030-D07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-030-D07, full insert sequence.
FL= gb:AK060695.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4656011/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g46520Os.10393.1.S1_at11/112+28356958..28361034Peptidase family M20/M25/M40 containing protein, expressed
LOC_Os02g46520Os.27487.1.A1_at2/112+28356958..28361034Peptidase family M20/M25/M40 containing protein, expressed
LOC_Os02g46520Os.11796.1.S1_at1/112+28356958..28361034Peptidase family M20/M25/M40 containing protein, expressed
LOC_Os02g46530OsAffx.24755.1.S1_at11/112+28362729..28363235hypothetical protein
LOC_Os02g46540NANA2+28376885..28377103hypothetical protein
LOC_Os02g46550OsAffx.2980.1.S1_at11/112+28382185..28382508hypothetical protein
LOC_Os02g46560Os.51109.1.S1_at11/112+28384301..28387379Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g46570Os.27691.1.S1_x_at2/112+28391863..28393311retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g46570Os.27691.2.S1_x_at2/112+28391863..28393311retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g46580Os.27691.1.S1_x_at2/112+28395516..28400717retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51109.1.S1_at--564--1431Chr02:28386999..28387023 (25 bp)
AGAACTCGCGACGTACATGTACTGA
LOC_Os02g46560
Os.51109.1.S1_at--112--2851Chr02:28387032..28387056 (25 bp)
AAGTGCCTTACATGTCGTCGTTTGT
LOC_Os02g46560
Os.51109.1.S1_at--274--8671Chr02:28387054..28387078 (25 bp)
TGTGTGGTCGCGTGTACTGTATGCC
LOC_Os02g46560
Os.51109.1.S1_at--178--10371Chr02:28387099..28387123 (25 bp)
TTTTTAGGCTCGTCACGTTTTTGCT
LOC_Os02g46560
Os.51109.1.S1_at--595--1891Chr02:28387113..28387137 (25 bp)
ACGTTTTTGCTGTGTAGTGGCCCGG
LOC_Os02g46560
Os.51109.1.S1_at--991--8451Chr02:28387130..28387154 (25 bp)
TGGCCCGGCAGGTTAGATCTAGTTC
LOC_Os02g46560
Os.51109.1.S1_at--899--3011Chr02:28387176..28387200 (25 bp)
AATGCTATGTGTCCAGTAGTCCCAG
LOC_Os02g46560
Os.51109.1.S1_at--1121--7011Chr02:28387216..28387240 (25 bp)
GTACTTGTCTGTTTCTCGTTCTGAA
LOC_Os02g46560
Os.51109.1.S1_at--527--8751Chr02:28387259..28387283 (25 bp)
TGTACCTGTACAGTATCCTGCCTCG
LOC_Os02g46560
Os.51109.1.S1_at--460--1371Chr02:28387297..28387321 (25 bp)
AGAGCGACTAGCGAGTAGCGACATT
LOC_Os02g46560
Os.51109.1.S1_at--1040--6871Chr02:28387343..28387367 (25 bp)
GTATTATCCGAACAGGGCCTTATGA
LOC_Os02g46560
Target Sequence 
AGAACTCGCGACGTACATGTACTGAGCCGCTCCAAGTGCCTTACATGTCGTCGTTTGTGTGGTCGCGTGTACTGTATGCC
GCGCTCCCGTTTTTCTCCCCTTTTTAGGCTCGTCACGTTTTTGCTGTGTAGTGGCCCGGCAGGTTAGATCTAGTTCTAGT
TGTACTAGTAGATGCAAAATGCTATGTGTCCAGTAGTCCCAGCCTCTCGACGAGGGCGTACTTGTCTGTTTCTCGTTCTG
AAAACAGAATGTTGTATTGCTGTACCTGTACAGTATCCTGCCTCGCCTTTCTGTAATAAGAGCGACTAGCGAGTAGCGAC
ATTGGAAGGAACAGTTCGAGATTCGTATTATCCGAACAGGGCCTTATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51109.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis