Browse Element(s) Details


Os.51130.1.S1_at

Description gb:AK061052.1
DB_XREF= gi:32971070
TID=Os.51130.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51130 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023084F15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-205-G05, full insert sequence.
FL= gb:AK061052.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4018011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g40140OsAffx.4571.1.S1_at11/115+23491852..23493428retrotransposon protein, putative, unclassified
LOC_Os05g40150OsAffx.27252.1.S1_at11/115+23498045..23502194NB-ARC domain containing protein
LOC_Os05g40160Os.50474.1.S1_at11/115+23503562..23507180NB-ARC domain containing protein, expressed
LOC_Os05g40170Os.4820.1.S1_at11/115+23509834..23512004expressed protein
LOC_Os05g40180OsAffx.27253.1.S1_x_at11/115+23515822..23517941Protein kinase domain containing protein, expressed
LOC_Os05g40180Os.51130.1.S1_at11/115+23515822..23517941Protein kinase domain containing protein, expressed
LOC_Os05g40190OsAffx.15036.1.S1_s_at11/115+23517742..23521841Thioredoxin family protein, expressed
LOC_Os05g40190Os.51130.2.S1_at11/115+23517742..23521841Thioredoxin family protein, expressed
LOC_Os05g40190Os.52273.1.S1_at10/115+23517742..23521841Thioredoxin family protein, expressed
LOC_Os05g40190OsAffx.15036.1.S1_at10/115+23517742..23521841Thioredoxin family protein, expressed
LOC_Os05g40200Os.48975.1.S1_at10/115+23522217..23527785leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os05g40220Os.47852.1.S1_at11/115+23539525..23543828retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0042548biological_processregulation of photosynthesis, light reaction
GO:0042549biological_processphotosystem II stabilization
GO:0009507cellular_componentchloroplast
GO:0009579cellular_componentthylakoid
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51130.1.S1_at--746--9651Chr05:23517581..23517605 (25 bp)
TCACTCAGCAAGTAGGTTATACAAA
LOC_Os05g40180
Os.51130.1.S1_at--195--3531Chr05:23517633..23517657 (25 bp)
CATGCAGTGATCAGGTCACCACTCA
LOC_Os05g40180
Os.51130.1.S1_at--942--9651Chr05:23517648..23517672 (25 bp)
TCACCACTCACCAATGGCATTAGCA
LOC_Os05g40180
Os.51130.1.S1_at--460--4951Chr05:23517670..23517694 (25 bp)
GCATTTTTGTTTATGATCCATTGGA
LOC_Os05g40180
Os.51130.1.S1_at--156--5011Chr05:23517819..23517843 (25 bp)
GCAGACACTAGCTAACTTAACTTAA
LOC_Os05g40180
Os.51130.1.S1_at--129--9751Chr05:23517841..23517865 (25 bp)
TAATTACTGCCCGTATTCGGACTGA
LOC_Os05g40180
Os.51130.1.S1_at--828--6871Chr05:23517853..23517877 (25 bp)
GTATTCGGACTGAACTCTACTGAGA
LOC_Os05g40180
Os.51130.1.S1_at--676--5471Chr05:23517864..23517888 (25 bp)
GAACTCTACTGAGAAATCCCTACTT
LOC_Os05g40180
Os.51130.1.S1_at--536--2271Chr05:23517877..23517901 (25 bp)
AAATCCCTACTTCTGTTGGTCAGCT
LOC_Os05g40180
Os.51130.1.S1_at--657--7111Chr05:23517895..23517919 (25 bp)
GTCAGCTTCTTGCAACCTATGTAGA
LOC_Os05g40180
Os.51130.1.S1_at--772--1251Chr05:23517917..23517941 (25 bp)
AGATTTCTGAACTGTTTCTTCAGCC
LOC_Os05g40180
Target Sequence 
TCACTCAGCAAGTAGGTTATACAAAACAACTCAATGCACAAAATTAAGAACACATGCAGTGATCAGGTCACCACTCACCA
ATGGCATTAGCATTTTTGTTTATGATCCATTGGAGAGATCAAGAACTCAAGATTGATCCAAGAGAGAGGGAAAAGGANGA
NGAANAAACAATATGGTAATATATAATTACATTGTTTTGTATGANGTTAATCACTTTGANCAGTGCGGTGCANAGTTTGC
AGACACTAGCTAACTTAACTTAATTACTGCCCGTATTCGGACTGAACTCTACTGAGAAATCCCTACTTCTGTTGGTCAGC
TTCTTGCAACCTATGTAGATTTCTGAACTGTTTCTTCAGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51130.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis