Browse Element(s) Details


Os.51154.1.S1_at

Description gb:AK061191.1
DB_XREF= gi:32971209
TID=Os.51154.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51154 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-209-F07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-209-F07, full insert sequence.
FL= gb:AK061191.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0191011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g01874Os.52257.1.S1_at11/114+536282..544079Protein kinase domain containing protein, expressed
LOC_Os04g01890OsAffx.25828.1.S1_at11/114+551025..553022Protein kinase domain containing protein
LOC_Os04g01900NANA4+557063..557893transposon protein, putative, unclassified
LOC_Os04g01910Os.51154.1.S1_at11/114+559389..560725expressed protein
LOC_Os04g01920NANA4+561017..561304hypothetical protein
LOC_Os04g01930OsAffx.13617.1.S1_x_at11/114+576481..578063exostosin family protein, putative
LOC_Os04g01930OsAffx.13617.1.S1_at11/114+576481..578063exostosin family protein, putative
LOC_Os04g01930OsAffx.27499.3.S1_x_at1/114+576481..578063exostosin family protein, putative
LOC_Os04g01940OsAffx.25829.1.S1_at11/114+579506..582256hypothetical protein
LOC_Os04g01950Os.51275.1.S1_at11/114+583902..584993expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51154.1.S1_at--580--10551Chr04:559951..559975 (25 bp)
TTCTTCGCCGGCACGGTCAGGGACG
LOC_Os04g01910
Os.51154.1.S1_at--374--4251Chr04:559926..559950 (25 bp)
CCGTCCTCGGCATCCGTGACTGGAA
LOC_Os04g01910
Os.51154.1.S1_at--1005--7351Chr04:559911..559935 (25 bp)
GTGACTGGAACCTCACGGTGGACAG
LOC_Os04g01910
Os.51154.1.S1_at--8--7471Chr04:559747..559771 (25 bp)
GTGTGCTACATGGTGTCACGGAGAC
LOC_Os04g01910
Os.51154.1.S1_at--601--5991Chr04:559714..559738 (25 bp)
GAGACGGAGCGAATTAGGCAATACA
LOC_Os04g01910
Os.51154.1.S1_at--860--5871Chr04:559708..559732 (25 bp)
GAGCGAATTAGGCAATACACCAAGT
LOC_Os04g01910
Os.51154.1.S1_at--1161--9831Chr04:559693..559717 (25 bp)
TACACCAAGTACTATTTTCCGGCAG
LOC_Os04g01910
Os.51154.1.S1_at--1017--4371Chr04:559689..559713 (25 bp)
CCAAGTACTATTTTCCGGCAGGAGG
LOC_Os04g01910
Os.51154.1.S1_at--588--8411Chr04:559662..559686 (25 bp)
GGCCCGGAAGCAACTGAATGTGAAT
LOC_Os04g01910
Os.51154.1.S1_at--366--5591Chr04:559632..559656 (25 bp)
GAAATTATCGTACGTAGGAGTATTA
LOC_Os04g01910
Os.51154.1.S1_at--999--2211Chr04:559598..559622 (25 bp)
ACAAGTCGCTTTGATACTTCTTTTT
LOC_Os04g01910
Target Sequence 
TTCTTCGCCGGCACGGTCAGGGACGCCGTCCTCGGCATCCGTGACTGGAACCTCACGGTGGACAGGTTCCCGGGCGACGG
GCGGCGGCGAGGAGAAGACGTTGATGAACAGGTGAAGAAGGGCACGCCGCCGTCGCGGTGGCTGGTGGCGCTGCTCGCCG
TGCTCGGCGCCGTTGCGGCGGTGGTGACCGTGGCGTCGGTGGTGGTGTGCTACATGGTGTCACGGAGACGGGCGCTGGAG
ACGGAGCGAATTAGGCAATACACCAAGTACTATTTTCCGGCAGGAGGGAGGCCCGGAAGCAACTGAATGTGAATAAAATG
AAATTATCGTACGTAGGAGTATTAATTTATATTACAAGTCGCTTTGATACTTCTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51154.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis