Browse Element(s) Details


Os.51159.1.S1_at

Description gb:AK061213.1
DB_XREF= gi:32971231
TID=Os.51159.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51159 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-210-D08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-210-D08, full insert sequence.
FL= gb:AK061213.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1636011/11expressed protein
LOC_Os03g136401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g16340OsAffx.20677.1.S1_at6/1112+9341522..9348092retrotransposon protein, putative, unclassified, expressed
LOC_Os12g16340OsAffx.19702.1.S1_x_at1/1112+9341522..9348092retrotransposon protein, putative, unclassified, expressed
LOC_Os12g16350Os.2764.1.S1_s_at11/1112+9348274..93629903-hydroxyisobutyryl-coenzyme A hydrolase, putative, expressed
LOC_Os12g16350Os.2764.2.S1_x_at11/1112+9348274..93629903-hydroxyisobutyryl-coenzyme A hydrolase, putative, expressed
LOC_Os12g16350OsAffx.30751.1.S1_at11/1112+9348274..93629903-hydroxyisobutyryl-coenzyme A hydrolase, putative, expressed
LOC_Os12g16350OsAffx.19702.1.S1_x_at8/1112+9348274..93629903-hydroxyisobutyryl-coenzyme A hydrolase, putative, expressed
LOC_Os12g16350OsAffx.19702.1.S1_at7/1112+9348274..93629903-hydroxyisobutyryl-coenzyme A hydrolase, putative, expressed
LOC_Os12g16350Os.5582.2.S1_x_at4/1112+9348274..93629903-hydroxyisobutyryl-coenzyme A hydrolase, putative, expressed
LOC_Os12g16350Os.47000.1.S1_x_at4/1112+9348274..93629903-hydroxyisobutyryl-coenzyme A hydrolase, putative, expressed
LOC_Os12g16350Os.763.1.S1_at1/1112+9348274..93629903-hydroxyisobutyryl-coenzyme A hydrolase, putative, expressed
LOC_Os12g16360Os.51159.1.S1_at11/1112+9372347..9373384expressed protein
LOC_Os12g16370NANA12+9374429..9374710hypothetical protein
LOC_Os12g16380NANA12+9375600..9378693transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g16390Os.45902.1.A1_x_at4/1112+9380407..9382020Zinc knuckle family protein
LOC_Os12g16390Os.56372.1.S1_at1/1112+9380407..9382020Zinc knuckle family protein
LOC_Os12g16400Os.47463.1.S1_x_at5/1112+9382878..9386593transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g16400Os.14491.2.S1_x_at4/1112+9382878..9386593transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g16410Os.8199.1.S1_at11/1112+9394476..9397820Isoflavone reductase homolog, putative, expressed
LOC_Os12g16410Os.14533.1.S1_a_at1/1112+9394476..9397820Isoflavone reductase homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51159.1.S1_at--785--5072Chr12:9372831..9372855 (25 bp)
GCAGCGATGTATCCCTCATGACGAG
LOC_Os12g16360
Os.51159.1.S1_at--42--3711Chr12:9372891..9372915 (25 bp)
CTATGGCTGCCATCTAGGTGGTAGG
LOC_Os12g16360
Os.51159.1.S1_at--121--1131Chr12:9372999..9373023 (25 bp)
AGTGCACGCTGGCATTCACCTTGTG
LOC_Os12g16360
Os.51159.1.S1_at--745--9671Chr12:9373056..9373080 (25 bp)
TCACATGCAGCCATCGATCATCGAT
LOC_Os12g16360
Os.51159.1.S1_at--1003--8511Chr12:9373091..9373115 (25 bp)
TGGAAGCCGGCGAGCAATCACGTGC
LOC_Os12g16360
Os.51159.1.S1_at--11--3091Chr12:9373106..9373130 (25 bp)
AATCACGTGCATGTGCAGTGTCAGG
LOC_Os12g16360
Os.51159.1.S1_at--1061--972Chr12:9373139..9373163 (25 bp)
AGGAGTTCCTTGTGGTCGTCGGCTC
LOC_Os12g16360
Os.51159.1.S1_at--868--7171Chr12:9373156..9373180 (25 bp)
GTCGGCTCCGAGAAACTGCTTACCA
LOC_Os12g16360
Os.51159.1.S1_at--1118--3652Chr12:9373174..9373198 (25 bp)
CTTACCACAGGAGTCGTCGGAGGCA
LOC_Os12g16360
Os.51159.1.S1_at--470--171Chr12:9373232..9373256 (25 bp)
ATTTTGTTGTAGGAGCGAAGCCACC
LOC_Os12g16360
Os.51159.1.S1_at--719--8811Chr12:9373260..9373284 (25 bp)
TGATTTACCATACCCAGCTTTTTAA
LOC_Os12g16360
Target Sequence 
GCAGCGATGTATCCCTCATGACGAGGAGCGCAGAGATGGGGCTGGCCCCGTCGCCCGTGTCTATGGCTGCCATCTAGGTG
GTAGGATACGGGGTGGTGGGAACCATGGTGGAGGAGACAGCAGCCCACCATCCACAGCAGTCCCATCCATCCCTCTCACG
TCGCCGCCAGTGCACGCTGGCATTCACCTTGTGCGGCGGCGATAGACTGGAGCCCCGGCGACCGGTCACATGCAGCCATC
GATCATCGATGGGATGGAGGTGGAAGCCGGCGAGCAATCACGTGCATGTGCAGTGTCAGGAGGACGGGAGGAGTTCCTTG
TGGTCGTCGGCTCCGAGAAACTGCTTACCACAGGAGTCGTCGGAGGCAGATATGTTGTATTTTGTTTTGTTTGTTTTTCG
CATTTTGTTGTAGGAGCGAAGCCACCGCCTGATTTACCATACCCAGCTTTTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51159.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis